Variant report

Variant	rs35724007
Chromosome Location	chr12:118230300-118230301
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1078653	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11068675	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11068678	0.83[EUR][1000 genomes]
rs11832804	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17585881	0.82[AMR][1000 genomes]
rs56138435	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56296939	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56918257	0.86[AMR][1000 genomes]
rs61937746	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61937747	0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs61939862	0.90[AMR][1000 genomes]
rs61939864	0.80[AMR][1000 genomes]
rs6490153	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6490155	0.86[AMR][1000 genomes]
rs7309450	0.80[AMR][1000 genomes]
rs7960031	0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv560387	chr12:118219415-118239673	Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
2	esv3335627	chr12:118229369-118234167	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
3	esv3333731	chr12:118229469-118233667	Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
4	esv3329687	chr12:118229569-118233767	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:118210000-118230800	Weak transcription	Pancreas	Pancrea
2	chr12:118227600-118230800	Weak transcription	Spleen	Spleen
3	chr12:118228600-118230600	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr12:118228800-118230800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr12:118229400-118230600	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr12:118229600-118230800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr12:118229600-118231200	Enhancers	Placenta Amnion	Placenta Amnion

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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