The 2.0 version of rSNPBase

Variant report

Variant rs61946958
Chromosome Location chr13:30842365-30842366
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:53 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr13:30799600-30845200 Weak transcription HMEC breast
2 chr13:30805600-30853200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
3 chr13:30810600-30849200 Weak transcription Fetal Muscle Trunk muscle
4 chr13:30813000-30849000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
5 chr13:30823600-30849200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
6 chr13:30823600-30849200 Weak transcription HSMM muscle
7 chr13:30823800-30849200 Weak transcription Fetal Brain Female brain
8 chr13:30824000-30845200 Weak transcription Thymus Thymus
9 chr13:30824000-30848800 Weak transcription Fetal Muscle Leg muscle
10 chr13:30824200-30849200 Weak transcription Primary hematopoietic stem cells short term culture blood
11 chr13:30824400-30849200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
12 chr13:30826800-30860400 Weak transcription Esophagus oesophagus
13 chr13:30828200-30849000 Weak transcription Muscle Satellite Cultured Cells --
14 chr13:30828400-30848800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
15 chr13:30828600-30857600 Weak transcription Rectal Mucosa Donor 29 rectum
16 chr13:30829600-30845200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
17 chr13:30829600-30845200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
18 chr13:30829600-30848800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
19 chr13:30829800-30847400 Weak transcription Primary hematopoietic stem cells blood
20 chr13:30829800-30850000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
21 chr13:30832000-30845200 Weak transcription Primary B cells from cord blood blood
22 chr13:30832000-30849000 Weak transcription Fetal Lung lung
23 chr13:30832200-30845200 Weak transcription Breast Myoepithelial Primary Cells Breast
24 chr13:30832200-30845200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
25 chr13:30832200-30848000 Weak transcription NHLF lung
26 chr13:30832200-30849200 Weak transcription Aorta Aorta
27 chr13:30832200-30849400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
28 chr13:30832200-30855400 Weak transcription Fetal Brain Male brain
29 chr13:30832200-30861000 Weak transcription iPS-18 Cell Line embryonic stem cell
30 chr13:30832200-30863400 Weak transcription Stomach Smooth Muscle stomach
31 chr13:30832200-30863800 Weak transcription HSMMtube muscle
32 chr13:30832400-30846600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
33 chr13:30832400-30849000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
34 chr13:30832400-30859400 Weak transcription Brain Inferior Temporal Lobe brain
35 chr13:30833000-30845200 Weak transcription Cortex derived primary cultured neurospheres brain
36 chr13:30834600-30853000 Weak transcription Primary T regulatory cells fromperipheralblood blood
37 chr13:30837200-30853000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
38 chr13:30837800-30860000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
39 chr13:30840400-30847000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
40 chr13:30840400-30859800 Weak transcription H1 Cell Line embryonic stem cell
41 chr13:30841000-30842400 Enhancers Colon Smooth Muscle Colon
42 chr13:30841000-30845200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
43 chr13:30841600-30842400 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
44 chr13:30841600-30843000 Strong transcription Dnd41 blood
45 chr13:30841600-30849000 Weak transcription Duodenum Smooth Muscle Duodenum
46 chr13:30841600-30853200 Weak transcription Adipose Nuclei Adipose
47 chr13:30841800-30842400 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
48 chr13:30841800-30842400 Enhancers Ovary ovary
49 chr13:30841800-30843000 Enhancers GM12878-XiMat blood
50 chr13:30842000-30842400 Strong transcription NHDF-Ad bronchial

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Last update: Aug 31, 2015