Variant report

Variant	rs9551879
Chromosome Location	chr13:30827422-30827423
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12585819	0.98[ASN][1000 genomes]
rs12866391	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];0.92[GIH][hapmap];0.90[JPT][hapmap];1.00[LWK][hapmap];0.90[MEX][hapmap];0.82[MKK][hapmap];0.93[TSI][hapmap];0.82[YRI][hapmap];0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12870695	0.90[ASN][1000 genomes]
rs17632858	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs2031998	0.95[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];0.92[GIH][hapmap];0.90[JPT][hapmap];1.00[LWK][hapmap];0.90[MEX][hapmap];0.97[MKK][hapmap];0.90[TSI][hapmap];0.82[YRI][hapmap];0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2149970	0.81[ASN][1000 genomes]
rs2149971	1.00[CHB][hapmap];0.86[CHD][hapmap];0.90[JPT][hapmap];0.87[LWK][hapmap];0.89[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs2149973	0.90[CHB][hapmap]
rs35331241	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35963596	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3803272	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs3825532	1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs3825533	0.95[CHB][hapmap];0.85[JPT][hapmap];0.81[EUR][1000 genomes]
rs61946958	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6490447	1.00[YRI][hapmap]
rs7328946	0.81[CEU][hapmap];0.95[CHB][hapmap];0.84[EUR][1000 genomes]
rs7331974	1.00[YRI][hapmap]
rs7987688	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9550538	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9550539	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.87[TSI][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9550540	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9550541	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9551867	0.90[CHB][hapmap]
rs9551868	1.00[CHB][hapmap];0.85[CHD][hapmap];0.92[GIH][hapmap];0.90[JPT][hapmap];0.84[TSI][hapmap];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9551875	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9551882	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832572	chr13:30650005-30835256	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30791000-30831400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr13:30796800-30831400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr13:30799200-30831400	Weak transcription	Aorta	Aorta
4	chr13:30799400-30831600	Weak transcription	Right Ventricle	heart
5	chr13:30799600-30845200	Weak transcription	HMEC	breast
6	chr13:30803000-30831400	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr13:30803400-30827800	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr13:30803600-30830400	Weak transcription	Fetal Heart	heart
9	chr13:30803600-30831400	Weak transcription	Rectal Smooth Muscle	rectum
10	chr13:30804400-30831600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr13:30805600-30831600	Weak transcription	Left Ventricle	heart
12	chr13:30805600-30831600	Weak transcription	Stomach Smooth Muscle	stomach
13	chr13:30805600-30841800	Weak transcription	Ovary	ovary
14	chr13:30805600-30853200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr13:30810000-30831600	Weak transcription	NHLF	lung
16	chr13:30810600-30849200	Weak transcription	Fetal Muscle Trunk	muscle
17	chr13:30813000-30827800	Weak transcription	HUVEC	blood vessel
18	chr13:30813000-30849000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr13:30814800-30831400	Weak transcription	NH-A	brain
20	chr13:30816000-30827800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr13:30820600-30831800	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr13:30820600-30831800	Weak transcription	HSMMtube	muscle
23	chr13:30822400-30833600	Weak transcription	K562	blood
24	chr13:30822800-30834000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr13:30823400-30831000	Weak transcription	Fetal Stomach	stomach
26	chr13:30823400-30831600	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr13:30823600-30831200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr13:30823600-30831600	Weak transcription	Fetal Brain Male	brain
29	chr13:30823600-30849200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr13:30823600-30849200	Weak transcription	HSMM	muscle
31	chr13:30823800-30828000	Weak transcription	Fetal Thymus	thymus
32	chr13:30823800-30830600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr13:30823800-30833800	Weak transcription	NHEK	skin
34	chr13:30823800-30849200	Weak transcription	Fetal Brain Female	brain
35	chr13:30824000-30827800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr13:30824000-30828600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr13:30824000-30828800	Weak transcription	Fetal Lung	lung
38	chr13:30824000-30829800	Weak transcription	A549	lung
39	chr13:30824000-30830600	Weak transcription	Brain Hippocampus Middle	brain
40	chr13:30824000-30831400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr13:30824000-30831400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr13:30824000-30831400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr13:30824000-30831600	Weak transcription	H1 Cell Line	embryonic stem cell
44	chr13:30824000-30831600	Weak transcription	Primary B cells from peripheral blood	blood
45	chr13:30824000-30831600	Weak transcription	Adipose Nuclei	Adipose
46	chr13:30824000-30831600	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr13:30824000-30832000	Weak transcription	Fetal Kidney	kidney
48	chr13:30824000-30832000	Weak transcription	Osteobl	bone
49	chr13:30824000-30833400	Weak transcription	Monocytes-CD14+_RO01746	blood
50	chr13:30824000-30845200	Weak transcription	Thymus	Thymus

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