Variant report

Variant	rs61951427
Chromosome Location	chr13:65010825-65010826
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11842149	0.81[EUR][1000 genomes]
rs1340304	0.81[EUR][1000 genomes]
rs17086816	0.86[EUR][1000 genomes]
rs17087374	0.86[EUR][1000 genomes]
rs17346130	0.81[EUR][1000 genomes]
rs58225011	0.86[EUR][1000 genomes]
rs61949996	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs61951396	0.86[EUR][1000 genomes]
rs61951420	0.86[EUR][1000 genomes]
rs61951421	0.86[EUR][1000 genomes]
rs61951428	0.86[EUR][1000 genomes]
rs61951429	0.86[EUR][1000 genomes]
rs61951430	0.86[EUR][1000 genomes]
rs61951431	0.86[EUR][1000 genomes]
rs7324787	0.86[EUR][1000 genomes]
rs7324813	0.86[EUR][1000 genomes]
rs7326013	0.86[EUR][1000 genomes]
rs7331098	0.86[EUR][1000 genomes]
rs7336046	0.81[EUR][1000 genomes]
rs7336048	0.81[EUR][1000 genomes]
rs7992949	0.84[EUR][1000 genomes]
rs7994028	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv455914	chr13:64432922-65368490	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv561965	chr13:64432922-65368490	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv430577	chr13:64602899-65034099	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv3367739	chr13:64805577-65549276	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv900344	chr13:64868768-65193124	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1050887	chr13:64989770-65058348	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1047916	chr13:64993852-65024851	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv900346	chr13:64999866-65198145	Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv561968	chr13:65006281-65062206	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv428606	chr13:65008453-65158452	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:65009800-65012400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links