Variant report

Variant	rs61951428
Chromosome Location	chr13:65012747-65012748
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs11839298	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11839781	0.82[EUR][1000 genomes]
rs11842065	0.82[EUR][1000 genomes]
rs11842149	0.95[EUR][1000 genomes]
rs11843899	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1340304	0.95[EUR][1000 genomes]
rs1340322	0.91[EUR][1000 genomes]
rs1340332	0.82[EUR][1000 genomes]
rs1578298	0.86[EUR][1000 genomes]
rs17084847	0.82[EUR][1000 genomes]
rs17085086	0.82[EUR][1000 genomes]
rs17086816	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17087374	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17087395	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17346130	0.95[EUR][1000 genomes]
rs2200574	0.86[EUR][1000 genomes]
rs2211201	0.86[EUR][1000 genomes]
rs34510229	0.82[EUR][1000 genomes]
rs58225011	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61949883	0.82[EUR][1000 genomes]
rs61949884	0.82[EUR][1000 genomes]
rs61949886	0.82[EUR][1000 genomes]
rs61949887	0.82[EUR][1000 genomes]
rs61949888	0.82[EUR][1000 genomes]
rs61949915	0.86[EUR][1000 genomes]
rs61949916	0.86[EUR][1000 genomes]
rs61949917	0.86[EUR][1000 genomes]
rs61949918	0.82[EUR][1000 genomes]
rs61949919	0.86[EUR][1000 genomes]
rs61949920	0.86[EUR][1000 genomes]
rs61949921	0.86[EUR][1000 genomes]
rs61949922	0.86[EUR][1000 genomes]
rs61949923	0.86[EUR][1000 genomes]
rs61949924	0.86[EUR][1000 genomes]
rs61949925	0.86[EUR][1000 genomes]
rs61949926	0.82[EUR][1000 genomes]
rs61949927	0.86[EUR][1000 genomes]
rs61951396	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61951420	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61951421	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61951427	0.86[EUR][1000 genomes]
rs61951429	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61951430	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61951431	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61951439	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61951441	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61951442	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61951554	0.82[EUR][1000 genomes]
rs6562363	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7324787	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7324813	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7326013	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7326475	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7328538	0.86[EUR][1000 genomes]
rs7329855	0.86[EUR][1000 genomes]
rs7330611	0.82[EUR][1000 genomes]
rs7331098	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7336046	0.95[EUR][1000 genomes]
rs7336048	0.95[EUR][1000 genomes]
rs7992949	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7994028	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8000620	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv455914	chr13:64432922-65368490	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv561965	chr13:64432922-65368490	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv430577	chr13:64602899-65034099	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv3367739	chr13:64805577-65549276	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv900344	chr13:64868768-65193124	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1050887	chr13:64989770-65058348	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1047916	chr13:64993852-65024851	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv900346	chr13:64999866-65198145	Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv561968	chr13:65006281-65062206	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv428606	chr13:65008453-65158452	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:65011600-65014800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr13:65012000-65012800	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr13:65012200-65012800	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr13:65012200-65012800	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr13:65012200-65012800	Enhancers	Fetal Lung	lung
6	chr13:65012200-65013200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr13:65012400-65012800	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr13:65012400-65012800	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr13:65012400-65012800	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr13:65012600-65014200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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