Variant report

Variant	rs6562363
Chromosome Location	chr13:65045348-65045349
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11839298	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11842149	0.83[EUR][1000 genomes]
rs11843899	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1340304	0.83[EUR][1000 genomes]
rs17086816	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17087374	0.90[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17087395	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17346130	0.83[EUR][1000 genomes]
rs58225011	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61951396	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61951420	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61951421	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61951428	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61951429	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61951430	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61951431	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61951439	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61951441	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61951442	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7324787	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7324813	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7326013	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7326475	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7331098	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7336046	0.83[EUR][1000 genomes]
rs7336048	0.83[EUR][1000 genomes]
rs7992949	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7994028	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8000620	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv455914	chr13:64432922-65368490	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv561965	chr13:64432922-65368490	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3367739	chr13:64805577-65549276	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv900344	chr13:64868768-65193124	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1050887	chr13:64989770-65058348	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv900346	chr13:64999866-65198145	Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv561968	chr13:65006281-65062206	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv428606	chr13:65008453-65158452	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv900347	chr13:65018193-65103190	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:65043800-65046000	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr13:65043800-65046200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr13:65044000-65046000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr13:65044600-65046000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr13:65044800-65046000	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr13:65045000-65046000	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr13:65045000-65046200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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