Variant report

Variant	rs11842149
Chromosome Location	chr13:64970192-64970193
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs11839298	0.85[EUR][1000 genomes]
rs11839781	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11842065	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11843899	0.83[EUR][1000 genomes]
rs1340304	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1340322	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1340332	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1578298	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17084847	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17085086	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17086816	0.95[EUR][1000 genomes]
rs17087374	0.95[EUR][1000 genomes]
rs17087395	0.85[EUR][1000 genomes]
rs17346130	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2200574	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2211201	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34510229	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs58225011	0.95[EUR][1000 genomes]
rs61949883	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61949884	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61949885	0.89[AMR][1000 genomes]
rs61949886	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61949887	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61949888	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61949915	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61949916	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61949917	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61949918	0.86[EUR][1000 genomes]
rs61949919	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61949920	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61949921	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61949922	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61949923	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61949924	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61949925	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61949926	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61949927	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61951396	0.95[EUR][1000 genomes]
rs61951420	0.95[EUR][1000 genomes]
rs61951421	0.95[EUR][1000 genomes]
rs61951427	0.81[EUR][1000 genomes]
rs61951428	0.95[EUR][1000 genomes]
rs61951429	0.95[EUR][1000 genomes]
rs61951430	0.95[EUR][1000 genomes]
rs61951431	0.95[EUR][1000 genomes]
rs61951439	0.83[EUR][1000 genomes]
rs61951441	0.83[EUR][1000 genomes]
rs61951442	0.83[EUR][1000 genomes]
rs61951554	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6562363	0.83[EUR][1000 genomes]
rs7324787	0.95[EUR][1000 genomes]
rs7324813	0.95[EUR][1000 genomes]
rs7326013	0.95[EUR][1000 genomes]
rs7326475	0.83[EUR][1000 genomes]
rs7328538	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7329855	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7330611	0.86[EUR][1000 genomes]
rs7331098	0.95[EUR][1000 genomes]
rs7336046	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7336048	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7992949	0.93[EUR][1000 genomes]
rs7994028	0.93[EUR][1000 genomes]
rs8000620	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv455914	chr13:64432922-65368490	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv561965	chr13:64432922-65368490	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv430577	chr13:64602899-65034099	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv3367739	chr13:64805577-65549276	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv900343	chr13:64868768-64995181	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv900344	chr13:64868768-65193124	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:64968800-64971600	Weak transcription	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links