Variant report

Variant	rs61959694
Chromosome Location	chr13:90080121-90080122
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs12862256	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12865977	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12866211	0.97[EUR][1000 genomes]
rs12867739	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12873868	0.86[EUR][1000 genomes]
rs16942924	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17394575	0.97[EUR][1000 genomes]
rs2102239	0.97[EUR][1000 genomes]
rs34029683	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34224174	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34611980	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34707440	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35109239	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs36063115	0.97[EUR][1000 genomes]
rs61958037	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61959695	0.84[EUR][1000 genomes]
rs71444037	0.97[EUR][1000 genomes]
rs7317077	0.92[ASN][1000 genomes]
rs9301569	1.00[ASN][1000 genomes]
rs9555887	0.94[ASN][1000 genomes]
rs9555889	1.00[ASN][1000 genomes]
rs9560313	0.94[ASN][1000 genomes]
rs9560314	0.94[ASN][1000 genomes]
rs9560315	0.94[ASN][1000 genomes]
rs9560316	0.94[ASN][1000 genomes]
rs9560317	0.94[ASN][1000 genomes]
rs9560327	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9560328	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9560329	1.00[ASN][1000 genomes]
rs9560330	1.00[ASN][1000 genomes]
rs9560331	1.00[ASN][1000 genomes]
rs9588604	0.81[ASN][1000 genomes]
rs9588605	0.94[ASN][1000 genomes]
rs9634477	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915862	chr13:89408920-90118030	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1040210	chr13:89584630-90156186	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1048574	chr13:89650680-90232894	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv832676	chr13:89941212-90090424	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1044807	chr13:89991827-90263328	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1039775	chr13:89995537-90260944	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv900860	chr13:90008941-90259291	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv428613	chr13:90012119-90165711	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv900861	chr13:90037467-90097555	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv533455	chr13:90041897-90255725	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv900862	chr13:90067507-90129913	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
12	nsv900863	chr13:90067507-90145824	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:90075600-90084800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr13:90078800-90107200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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