Variant report

Variant	rs61978878
Chromosome Location	chr14:81746917-81746918
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:81687510..81689760-chr14:81742676..81747496,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165417	Chromatin interaction

rs_ID	r²[population]
rs34323725	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58773120	1.00[ASN][1000 genomes]
rs61126178	1.00[ASN][1000 genomes]
rs61978889	0.83[EUR][1000 genomes]
rs61978890	0.98[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61978891	0.95[AFR][1000 genomes]
rs8007436	1.00[ASN][1000 genomes]

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81729400-81752600	Weak transcription	Stomach Mucosa	stomach
2	chr14:81733200-81753000	Weak transcription	Hela-S3	cervix
3	chr14:81735600-81760200	Weak transcription	Primary hematopoietic stem cells	blood
4	chr14:81737600-81748000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr14:81741800-81768400	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr14:81742600-81747800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr14:81742600-81748200	Weak transcription	Fetal Brain Female	brain
8	chr14:81742600-81763400	Weak transcription	Psoas Muscle	Psoas
9	chr14:81743200-81750200	Weak transcription	Brain Substantia Nigra	brain
10	chr14:81743600-81751200	Weak transcription	Brain Anterior Caudate	brain
11	chr14:81743800-81778400	Weak transcription	Fetal Kidney	kidney
12	chr14:81744000-81755800	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr14:81744400-81747000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr14:81744400-81758600	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr14:81744400-81759200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr14:81744600-81747600	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr14:81744600-81747600	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr14:81744600-81747800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr14:81744600-81748400	Weak transcription	Gastric	stomach
20	chr14:81744800-81747200	Weak transcription	Esophagus	oesophagus
21	chr14:81744800-81751000	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr14:81744800-81751200	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr14:81744800-81752800	Weak transcription	HMEC	breast
24	chr14:81744800-81753800	Weak transcription	Placenta	Placenta
25	chr14:81744800-81756800	Weak transcription	K562	blood
26	chr14:81745000-81747400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr14:81745000-81747600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr14:81745000-81754000	Weak transcription	Fetal Intestine Small	intestine
29	chr14:81745000-81754600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr14:81745000-81755200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr14:81745000-81755200	Weak transcription	Fetal Muscle Trunk	muscle
32	chr14:81745000-81755200	Weak transcription	Fetal Muscle Leg	muscle
33	chr14:81745000-81755400	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr14:81745000-81755400	Weak transcription	Spleen	Spleen
35	chr14:81745000-81769600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr14:81745200-81747400	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr14:81745200-81747800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr14:81745200-81748000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr14:81745200-81753200	Weak transcription	NHEK	skin
40	chr14:81745200-81755200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr14:81745200-81755400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr14:81745200-81756000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr14:81745200-81758600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr14:81745400-81751800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr14:81746600-81748600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr14:81746800-81747000	Enhancers	Brain Germinal Matrix	brain
47	chr14:81746800-81749400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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