Variant report

Variant	rs61126178
Chromosome Location	chr14:81736727-81736728
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:81733049..81735838-chr14:81736167..81738052,2	MCF-7	breast:
2	chr14:81733496..81737456-chr14:81918664..81922273,4	MCF-7	breast:
3	chr14:81730236..81733765-chr14:81735324..81738162,3	K562	blood:
4	chr14:81736225..81738545-chr14:81918216..81919957,2	MCF-7	breast:
5	chr14:81684348..81690583-chr14:81729061..81738251,32	MCF-7	breast:
6	chr14:81683224..81690294-chr14:81730621..81737433,21	MCF-7	breast:
7	chr14:81686865..81688853-chr14:81734736..81736756,2	K562	blood:
8	chr14:81684594..81689943-chr14:81730721..81738333,8	K562	blood:
9	chr14:81719518..81722167-chr14:81734780..81736753,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000165417	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs17111574	0.82[EUR][1000 genomes]
rs17111613	1.00[EUR][1000 genomes]
rs17111624	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17111629	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2099109	0.82[EUR][1000 genomes]
rs34323725	1.00[ASN][1000 genomes]
rs55905846	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57391376	0.86[EUR][1000 genomes]
rs58773120	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59263263	0.86[EUR][1000 genomes]
rs59453808	0.98[EUR][1000 genomes]
rs61099429	0.85[EUR][1000 genomes]
rs61610956	0.98[EUR][1000 genomes]
rs61978863	0.98[EUR][1000 genomes]
rs61978868	0.95[EUR][1000 genomes]
rs61978869	0.98[EUR][1000 genomes]
rs61978871	0.95[EUR][1000 genomes]
rs61978875	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61978878	1.00[ASN][1000 genomes]
rs61980891	0.82[EUR][1000 genomes]
rs61980892	0.82[EUR][1000 genomes]
rs61980893	0.82[EUR][1000 genomes]
rs61980894	0.82[EUR][1000 genomes]
rs61980896	0.82[EUR][1000 genomes]
rs61980897	0.82[EUR][1000 genomes]
rs61980898	0.81[EUR][1000 genomes]
rs61980901	0.85[EUR][1000 genomes]
rs61980902	0.85[EUR][1000 genomes]
rs6574632	0.82[EUR][1000 genomes]
rs67933866	0.82[EUR][1000 genomes]
rs7143837	0.82[EUR][1000 genomes]
rs7148747	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7149917	1.00[EUR][1000 genomes]
rs7153668	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7160870	0.85[EUR][1000 genomes]
rs8006015	0.82[EUR][1000 genomes]
rs8007436	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8012466	0.82[EUR][1000 genomes]
rs8014102	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832841	chr14:81588322-81743921	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	86 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81714200-81738600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr14:81721200-81742400	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr14:81721400-81739800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr14:81721600-81739800	Weak transcription	Ovary	ovary
5	chr14:81722600-81741800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr14:81724600-81741800	Weak transcription	Brain Cingulate Gyrus	brain
7	chr14:81724600-81746000	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr14:81725000-81739800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr14:81725000-81740000	Weak transcription	Esophagus	oesophagus
10	chr14:81725000-81743600	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr14:81727600-81736800	Weak transcription	Psoas Muscle	Psoas
12	chr14:81727800-81746200	Weak transcription	NHDF-Ad	bronchial
13	chr14:81729400-81752600	Weak transcription	Stomach Mucosa	stomach
14	chr14:81730600-81743000	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr14:81730600-81744000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr14:81730800-81740000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr14:81730800-81743600	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr14:81731600-81739200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr14:81732400-81743600	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr14:81733200-81753000	Weak transcription	Hela-S3	cervix
21	chr14:81734600-81737200	Weak transcription	Colonic Mucosa	Colon
22	chr14:81734600-81741400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr14:81734600-81742400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr14:81734800-81738800	Weak transcription	HSMMtube	muscle
25	chr14:81734800-81743000	Weak transcription	Placenta	Placenta
26	chr14:81734800-81743400	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr14:81734800-81744000	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr14:81735000-81739200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr14:81735000-81739600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr14:81735000-81739600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr14:81735200-81738400	Strong transcription	NHEK	skin
32	chr14:81735400-81737200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
33	chr14:81735400-81737200	Enhancers	Skeletal Muscle Female	skeletal muscle
34	chr14:81735400-81739600	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr14:81735600-81736800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr14:81735600-81737600	Enhancers	iPS-15b Cell Line	embryonic stem cell
37	chr14:81735600-81737600	Enhancers	Skeletal Muscle Male	skeletal muscle
38	chr14:81735600-81738000	Enhancers	Brain Anterior Caudate	brain
39	chr14:81735600-81739000	Weak transcription	HMEC	breast
40	chr14:81735600-81760200	Weak transcription	Primary hematopoietic stem cells	blood
41	chr14:81735800-81736800	Weak transcription	K562	blood
42	chr14:81735800-81737000	Enhancers	Rectal Smooth Muscle	rectum
43	chr14:81735800-81743000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr14:81735800-81746400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr14:81736000-81737200	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
46	chr14:81736000-81741800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr14:81736000-81743400	Weak transcription	Fetal Intestine Large	intestine
48	chr14:81736000-81746000	Weak transcription	Duodenum Mucosa	Duodenum
49	chr14:81736200-81736800	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
50	chr14:81736200-81736800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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