Variant report

Variant	rs61980901
Chromosome Location	chr14:81689331-81689332
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:9)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:9 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr14:81689088-81689449	MCF-7	breast:	n/a	n/a
2	ARID3A	chr14:81689001-81689374	HepG2	liver:	n/a	n/a
3	POLR2A	chr14:81685190-81689361	H1-hESC	embryonic stem cell:	n/a	n/a
4	HDAC2	chr14:81689054-81689405	HepG2	liver:	n/a	n/a
5	FOXA1	chr14:81689106-81689379	T-47D	breast:	n/a	n/a
6	FOXA2	chr14:81689092-81689360	HepG2	liver:	n/a	n/a
7	CEBPB	chr14:81689018-81689499	HepG2	liver:	n/a	n/a
8	CEBPB	chr14:81689195-81689463	K562	blood:	n/a	n/a
9	POLR2A	chr14:81689325-81689336	HepG2	liver:	n/a	n/a

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:81687510..81689760-chr14:81742676..81747496,4	MCF-7	breast:
2	chr14:81682255..81691444-chr14:81709014..81722196,43	MCF-7	breast:
3	chr14:81688918..81692006-chr14:81697199..81699936,3	K562	blood:
4	chr14:81683519..81693455-chr14:81706363..81723125,33	MCF-7	breast:
5	chr14:81665997..81674006-chr14:81683759..81689461,17	MCF-7	breast:
6	chr14:81687764..81689461-chr14:81767377..81769848,3	K562	blood:
7	chr14:81684792..81690788-chr14:81724993..81730571,6	K562	blood:
8	chr14:81684227..81690291-chr14:81911956..81927827,27	MCF-7	breast:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TSHR-2	chr14:81687723-81689737	NONHSAT038056
2	lnc-TSHR-2	chr14:81688420-81689753	NONHSAT038057

No data

Variant related genes	Relation type
GTF2A1	TF binding region
ENSG00000140022	Chromatin interaction
ENSG00000221303	Chromatin interaction
ENSG00000270343	Chromatin interaction
ENSG00000258675	Chromatin interaction
ENSG00000205579	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs17111574	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17111613	0.85[EUR][1000 genomes]
rs17111624	0.85[EUR][1000 genomes]
rs17111629	0.85[EUR][1000 genomes]
rs2099109	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55905846	0.85[EUR][1000 genomes]
rs57391376	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57436191	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58773120	0.85[EUR][1000 genomes]
rs59263263	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59453808	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61099429	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61126178	0.85[EUR][1000 genomes]
rs61610956	0.87[EUR][1000 genomes]
rs61978863	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61978868	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61978869	0.87[EUR][1000 genomes]
rs61978871	0.84[EUR][1000 genomes]
rs61978875	0.85[EUR][1000 genomes]
rs61980891	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61980892	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61980893	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61980894	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61980896	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61980897	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61980898	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61980902	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6574632	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67933866	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7143837	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7148747	0.85[EUR][1000 genomes]
rs7149917	0.85[EUR][1000 genomes]
rs7153668	0.85[EUR][1000 genomes]
rs7160870	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72691643	1.00[ASN][1000 genomes]
rs8006015	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8007436	0.84[EUR][1000 genomes]
rs8012466	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8014102	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832841	chr14:81588322-81743921	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	86 gene(s)	inside rSNPs	diseases
2	nsv902118	chr14:81679650-81715989	Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	84 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81688200-81689400	Enhancers	Fetal Intestine Large	intestine
2	chr14:81688200-81689600	Enhancers	HepG2	liver
3	chr14:81688200-81690000	Weak transcription	Ovary	ovary
4	chr14:81688200-81704800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr14:81688400-81689400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr14:81688400-81689400	Enhancers	Fetal Intestine Small	intestine
7	chr14:81688400-81689400	Enhancers	Fetal Kidney	kidney
8	chr14:81688400-81689400	Enhancers	Fetal Muscle Leg	muscle
9	chr14:81688400-81689800	Enhancers	Stomach Mucosa	stomach
10	chr14:81688600-81689400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr14:81688600-81689400	Enhancers	A549	lung
12	chr14:81688600-81689400	Enhancers	Dnd41	blood
13	chr14:81688600-81689800	Weak transcription	Fetal Lung	lung
14	chr14:81688600-81693200	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr14:81688800-81689400	Enhancers	Liver	Liver
16	chr14:81688800-81700600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr14:81689000-81689400	Enhancers	K562	blood
18	chr14:81689200-81689600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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