Variant report

Variant	rs55905846
Chromosome Location	chr14:81723201-81723202
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs17111574	0.82[EUR][1000 genomes]
rs17111613	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17111624	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17111629	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2099109	0.82[EUR][1000 genomes]
rs57391376	0.86[EUR][1000 genomes]
rs58773120	1.00[EUR][1000 genomes]
rs59263263	0.86[EUR][1000 genomes]
rs59453808	0.98[EUR][1000 genomes]
rs61099429	0.85[EUR][1000 genomes]
rs61126178	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61610956	0.98[EUR][1000 genomes]
rs61978863	0.98[EUR][1000 genomes]
rs61978868	0.95[EUR][1000 genomes]
rs61978869	0.98[EUR][1000 genomes]
rs61978871	0.95[EUR][1000 genomes]
rs61978875	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61980891	0.82[EUR][1000 genomes]
rs61980892	0.82[EUR][1000 genomes]
rs61980893	0.82[EUR][1000 genomes]
rs61980894	0.82[EUR][1000 genomes]
rs61980896	0.82[EUR][1000 genomes]
rs61980897	0.82[EUR][1000 genomes]
rs61980898	0.81[EUR][1000 genomes]
rs61980901	0.85[EUR][1000 genomes]
rs61980902	0.85[EUR][1000 genomes]
rs6574632	0.82[EUR][1000 genomes]
rs67933866	0.82[EUR][1000 genomes]
rs7143837	0.82[EUR][1000 genomes]
rs7148747	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7149917	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7153668	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7160870	0.85[EUR][1000 genomes]
rs8006015	0.82[EUR][1000 genomes]
rs8007436	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8012466	0.82[EUR][1000 genomes]
rs8014102	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832841	chr14:81588322-81743921	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	86 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81714000-81725600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr14:81714000-81725800	Weak transcription	NHEK	skin
3	chr14:81714200-81725600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr14:81714200-81726000	Weak transcription	HMEC	breast
5	chr14:81714200-81738600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr14:81714400-81725800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr14:81714400-81734000	Weak transcription	Fetal Muscle Trunk	muscle
8	chr14:81714600-81725400	Weak transcription	Fetal Muscle Leg	muscle
9	chr14:81714600-81726000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr14:81714800-81726200	Weak transcription	Placenta	Placenta
11	chr14:81719800-81735600	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr14:81721200-81735600	Weak transcription	Brain Anterior Caudate	brain
13	chr14:81721200-81742400	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr14:81721400-81739800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr14:81721600-81733400	Weak transcription	K562	blood
16	chr14:81721600-81739800	Weak transcription	Ovary	ovary
17	chr14:81722200-81723600	Enhancers	Primary B cells from peripheral blood	blood
18	chr14:81722400-81723400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr14:81722600-81723600	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr14:81722600-81741800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr14:81722800-81723400	Enhancers	H9 Cell Line	embryonic stem cell
22	chr14:81722800-81725600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr14:81723000-81723400	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr14:81723000-81723400	Enhancers	Primary monocytes fromperipheralblood	blood
25	chr14:81723000-81723400	Enhancers	Dnd41	blood
26	chr14:81723000-81723600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr14:81723000-81734200	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr14:81723200-81723400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr14:81723200-81723400	Enhancers	HUES6 Cell Line	embryonic stem cell
30	chr14:81723200-81723400	Enhancers	iPS-15b Cell Line	embryonic stem cell
31	chr14:81723200-81725600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr14:81723200-81728400	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr14:81723200-81728600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr14:81723200-81730200	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr14:81723200-81732000	Weak transcription	Primary hematopoietic stem cells	blood

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