Variant report

Variant	rs59453808
Chromosome Location	chr14:81712638-81712639
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:81685898..81688626-chr14:81711867..81715225,3	K562	blood:
2	chr14:81683519..81693455-chr14:81706363..81723125,33	MCF-7	breast:
3	chr14:81682255..81691444-chr14:81709014..81722196,43	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165417	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs17111574	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17111613	0.98[EUR][1000 genomes]
rs17111624	0.98[EUR][1000 genomes]
rs17111629	0.98[EUR][1000 genomes]
rs2099109	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs55905846	0.98[EUR][1000 genomes]
rs57391376	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs57436191	0.81[AMR][1000 genomes]
rs58773120	0.98[EUR][1000 genomes]
rs59263263	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61099429	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61126178	0.98[EUR][1000 genomes]
rs61610956	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61978863	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61978868	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61978869	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61978871	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61978875	0.98[EUR][1000 genomes]
rs61980891	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61980892	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61980893	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61980894	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61980896	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61980897	0.81[EUR][1000 genomes]
rs61980898	0.82[EUR][1000 genomes]
rs61980901	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61980902	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6574632	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs67933866	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7143837	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7148747	0.98[EUR][1000 genomes]
rs7149917	0.98[EUR][1000 genomes]
rs7153668	0.98[EUR][1000 genomes]
rs7160870	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8006015	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs8007436	0.97[EUR][1000 genomes]
rs8012466	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs8014102	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832841	chr14:81588322-81743921	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	86 gene(s)	inside rSNPs	diseases
2	nsv902118	chr14:81679650-81715989	Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	84 gene(s)	inside rSNPs	n/a
3	nsv974355	chr14:81705202-81712801	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81711600-81722000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:81711800-81714600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr14:81712000-81713000	Enhancers	Dnd41	blood
4	chr14:81712000-81714200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr14:81712000-81714400	Enhancers	NHDF-Ad	bronchial
6	chr14:81712200-81713600	Enhancers	Ovary	ovary
7	chr14:81712200-81714400	Enhancers	Fetal Muscle Trunk	muscle
8	chr14:81712400-81714200	Enhancers	Muscle Satellite Cultured Cells	--
9	chr14:81712600-81714200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr14:81712600-81714200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr14:81712600-81714600	Flanking Active TSS	HSMM	muscle

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