Variant report

Variant	rs7153668
Chromosome Location	chr14:81727979-81727980
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr14:81724662-81728168	K562	blood:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:81684792..81690788-chr14:81724993..81730571,6	K562	blood:
2	chr14:81727889..81730386-chr14:81731826..81734332,3	MCF-7	breast:
3	chr14:81684386..81687381-chr14:81725613..81728928,6	MCF-7	breast:
4	chr14:81727868..81730785-chr14:81767384..81769125,2	MCF-7	breast:
5	chr14:81685695..81688559-chr14:81726422..81730373,5	MCF-7	breast:

No data

Variant related genes	Relation type
UNGP3	TF binding region
ENSG00000165417	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs12889291	1.00[JPT][hapmap]
rs12894596	1.00[JPT][hapmap]
rs17111574	0.82[EUR][1000 genomes]
rs17111613	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17111624	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17111629	0.91[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2099109	0.82[EUR][1000 genomes]
rs55905846	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57391376	0.86[EUR][1000 genomes]
rs58773120	1.00[EUR][1000 genomes]
rs59263263	0.86[EUR][1000 genomes]
rs59453808	0.98[EUR][1000 genomes]
rs61099429	0.85[EUR][1000 genomes]
rs61126178	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61610956	0.98[EUR][1000 genomes]
rs61978863	0.98[EUR][1000 genomes]
rs61978868	0.95[EUR][1000 genomes]
rs61978869	0.98[EUR][1000 genomes]
rs61978871	0.95[EUR][1000 genomes]
rs61978875	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61980891	0.82[EUR][1000 genomes]
rs61980892	0.82[EUR][1000 genomes]
rs61980893	0.82[EUR][1000 genomes]
rs61980894	0.82[EUR][1000 genomes]
rs61980896	0.82[EUR][1000 genomes]
rs61980897	0.82[EUR][1000 genomes]
rs61980898	0.81[EUR][1000 genomes]
rs61980901	0.85[EUR][1000 genomes]
rs61980902	0.85[EUR][1000 genomes]
rs6574632	1.00[CEU][hapmap];0.85[YRI][hapmap];0.82[EUR][1000 genomes]
rs67933866	0.82[EUR][1000 genomes]
rs7143837	1.00[CEU][hapmap];0.85[YRI][hapmap];0.82[EUR][1000 genomes]
rs7148747	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7149917	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7160870	0.85[EUR][1000 genomes]
rs8006015	0.82[EUR][1000 genomes]
rs8007436	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8012466	1.00[CEU][hapmap];0.84[YRI][hapmap];0.82[EUR][1000 genomes]
rs8014102	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832841	chr14:81588322-81743921	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	86 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81714200-81738600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr14:81714400-81734000	Weak transcription	Fetal Muscle Trunk	muscle
3	chr14:81719800-81735600	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr14:81721200-81735600	Weak transcription	Brain Anterior Caudate	brain
5	chr14:81721200-81742400	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr14:81721400-81739800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr14:81721600-81733400	Weak transcription	K562	blood
8	chr14:81721600-81739800	Weak transcription	Ovary	ovary
9	chr14:81722600-81741800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr14:81723000-81734200	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr14:81723200-81728400	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr14:81723200-81728600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr14:81723200-81730200	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr14:81723200-81732000	Weak transcription	Primary hematopoietic stem cells	blood
15	chr14:81723400-81728200	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr14:81723400-81729000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr14:81723400-81730200	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr14:81723400-81734000	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr14:81723400-81734200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr14:81724400-81730200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr14:81724400-81735400	Weak transcription	Fetal Intestine Large	intestine
22	chr14:81724600-81736400	Weak transcription	Fetal Intestine Small	intestine
23	chr14:81724600-81741800	Weak transcription	Brain Cingulate Gyrus	brain
24	chr14:81724600-81746000	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr14:81724800-81736400	Weak transcription	Spleen	Spleen
26	chr14:81725000-81739800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr14:81725000-81740000	Weak transcription	Esophagus	oesophagus
28	chr14:81725000-81743600	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr14:81725400-81729400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr14:81725600-81728200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr14:81725600-81734000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr14:81725600-81734400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr14:81725800-81728400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr14:81725800-81728800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr14:81725800-81734200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr14:81725800-81734200	Strong transcription	NHEK	skin
37	chr14:81726000-81730600	Strong transcription	HMEC	breast
38	chr14:81726200-81728200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
39	chr14:81726400-81732600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr14:81726400-81733800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr14:81726400-81734200	Weak transcription	Placenta	Placenta
42	chr14:81726800-81736600	Weak transcription	Brain Substantia Nigra	brain
43	chr14:81727200-81728200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr14:81727600-81736800	Weak transcription	Psoas Muscle	Psoas
45	chr14:81727800-81734200	Weak transcription	Fetal Muscle Leg	muscle
46	chr14:81727800-81746200	Weak transcription	NHDF-Ad	bronchial

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