Variant report

Variant	rs61978891
Chromosome Location	chr14:81757438-81757439
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs34323725	0.95[AFR][1000 genomes]
rs61978878	0.95[AFR][1000 genomes]
rs61978889	0.88[AMR][1000 genomes]
rs61978890	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61978897	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61978912	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61978914	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7160960	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81735600-81760200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr14:81741800-81768400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr14:81742600-81763400	Weak transcription	Psoas Muscle	Psoas
4	chr14:81743800-81778400	Weak transcription	Fetal Kidney	kidney
5	chr14:81744400-81758600	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr14:81744400-81759200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr14:81745000-81769600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr14:81745200-81758600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr14:81749800-81762400	Weak transcription	HSMMtube	muscle
10	chr14:81749800-81771400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr14:81754400-81777800	Weak transcription	Ovary	ovary
12	chr14:81755000-81769000	Weak transcription	Pancreas	Pancrea
13	chr14:81755400-81757600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr14:81756400-81760200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr14:81756600-81777400	Weak transcription	Fetal Muscle Leg	muscle
16	chr14:81756800-81757800	Strong transcription	K562	blood
17	chr14:81756800-81760200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr14:81757000-81757600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr14:81757000-81758600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr14:81757000-81759000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr14:81757200-81758600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr14:81757200-81758600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr14:81757200-81760800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr14:81757200-81761800	Weak transcription	NHEK	skin
25	chr14:81757200-81762800	Weak transcription	HMEC	breast
26	chr14:81757400-81758200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr14:81757400-81759600	Weak transcription	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links