Variant report

Variant	rs61979481
Chromosome Location	chr14:70689710-70689711
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr14:70689654-70689800	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:70668752..70670788-chr14:70688180..70689726,2	K562	blood:

Variant related genes	Relation type
ENSG00000258422	TF binding region

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs1044538	1.00[ASN][1000 genomes]
rs11158860	1.00[ASN][1000 genomes]
rs11621661	1.00[ASN][1000 genomes]
rs11622793	1.00[ASN][1000 genomes]
rs11623663	1.00[ASN][1000 genomes]
rs11624147	1.00[ASN][1000 genomes]
rs11624309	1.00[ASN][1000 genomes]
rs11624502	1.00[ASN][1000 genomes]
rs11624706	1.00[ASN][1000 genomes]
rs11626735	1.00[ASN][1000 genomes]
rs11627167	1.00[ASN][1000 genomes]
rs11627175	1.00[ASN][1000 genomes]
rs11627938	1.00[ASN][1000 genomes]
rs11629269	1.00[ASN][1000 genomes]
rs11845636	1.00[ASN][1000 genomes]
rs11845665	1.00[ASN][1000 genomes]
rs11846216	1.00[ASN][1000 genomes]
rs11846726	1.00[ASN][1000 genomes]
rs11849053	1.00[ASN][1000 genomes]
rs11849199	1.00[ASN][1000 genomes]
rs11849318	1.00[ASN][1000 genomes]
rs12587023	0.91[EUR][1000 genomes]
rs2022743	0.91[EUR][1000 genomes]
rs3859	1.00[ASN][1000 genomes]
rs45565842	1.00[ASN][1000 genomes]
rs58854929	1.00[ASN][1000 genomes]
rs61977472	1.00[ASN][1000 genomes]
rs61977473	1.00[ASN][1000 genomes]
rs61977474	1.00[ASN][1000 genomes]
rs61977478	1.00[ASN][1000 genomes]
rs61977479	1.00[ASN][1000 genomes]
rs61977501	1.00[ASN][1000 genomes]
rs61977502	1.00[ASN][1000 genomes]
rs61977508	1.00[ASN][1000 genomes]
rs61977509	1.00[ASN][1000 genomes]
rs61977511	1.00[ASN][1000 genomes]
rs61977535	1.00[ASN][1000 genomes]
rs61977538	1.00[ASN][1000 genomes]
rs61977539	1.00[ASN][1000 genomes]
rs61977540	1.00[ASN][1000 genomes]
rs61977541	1.00[ASN][1000 genomes]
rs61977544	1.00[ASN][1000 genomes]
rs61977549	1.00[ASN][1000 genomes]
rs61977550	1.00[ASN][1000 genomes]
rs61977551	1.00[ASN][1000 genomes]
rs61977554	1.00[ASN][1000 genomes]
rs61977555	1.00[ASN][1000 genomes]
rs61978215	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61978216	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61978217	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61978220	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61978221	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61978222	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61978248	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61978250	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61978251	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61978255	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61978257	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61978259	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61979068	1.00[ASN][1000 genomes]
rs61979460	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61979461	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61979462	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61979464	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61979466	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61979467	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61979482	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61979483	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61979484	0.91[EUR][1000 genomes]
rs61979485	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61979488	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61979490	0.90[EUR][1000 genomes]
rs61979502	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61979504	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61979505	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61979511	1.00[ASN][1000 genomes]
rs61979512	1.00[ASN][1000 genomes]
rs6573941	0.91[EUR][1000 genomes]
rs6573943	0.91[EUR][1000 genomes]
rs7142682	0.91[EUR][1000 genomes]
rs72625691	0.91[EUR][1000 genomes]
rs74062899	1.00[ASN][1000 genomes]
rs74065307	1.00[ASN][1000 genomes]
rs74065314	1.00[ASN][1000 genomes]
rs74065331	1.00[ASN][1000 genomes]
rs8003965	0.91[EUR][1000 genomes]
rs8004391	0.91[EUR][1000 genomes]
rs8019979	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832826	chr14:70559589-70723464	Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv902075	chr14:70612618-70919016	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	esv3516672	chr14:70686699-70690597	Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
4	esv3516666	chr14:70687049-70690447	Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	esv3530200	chr14:70687433-70689751	Enhancers Active TSS Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv565021	chr14:70688130-70690877	Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
7	nsv565030	chr14:70688352-70690877	Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
8	esv3345682	chr14:70689349-70691247	Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70689600-70690800	Active TSS	iPS-15b Cell Line	embryonic stem cell
2	chr14:70689600-70690800	Active TSS	K562	blood
3	chr14:70689600-70691000	Active TSS	ES-I3 Cell Line	embryonic stem cell

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