Variant report
| Variant | rs61979511 |
|---|---|
| Chromosome Location | chr14:70744225-70744226 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:103)
| rs_ID | r2[population] |
|---|---|
| rs1044538 | 1.00[ASN][1000 genomes] |
| rs11158860 | 1.00[ASN][1000 genomes] |
| rs11621163 | 1.00[ASN][1000 genomes] |
| rs11621190 | 1.00[ASN][1000 genomes] |
| rs11621272 | 1.00[ASN][1000 genomes] |
| rs11621607 | 1.00[ASN][1000 genomes] |
| rs11621661 | 1.00[ASN][1000 genomes] |
| rs11622793 | 1.00[ASN][1000 genomes] |
| rs11622815 | 1.00[ASN][1000 genomes] |
| rs11623663 | 1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11624147 | 1.00[ASN][1000 genomes] |
| rs11624309 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11624502 | 1.00[ASN][1000 genomes] |
| rs11624706 | 1.00[ASN][1000 genomes] |
| rs11626039 | 1.00[ASN][1000 genomes] |
| rs11626735 | 1.00[ASN][1000 genomes] |
| rs11627167 | 1.00[ASN][1000 genomes] |
| rs11627175 | 1.00[ASN][1000 genomes] |
| rs11627938 | 1.00[ASN][1000 genomes] |
| rs11629269 | 1.00[ASN][1000 genomes] |
| rs11845636 | 1.00[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11845665 | 1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11846101 | 1.00[ASN][1000 genomes] |
| rs11846216 | 1.00[ASN][1000 genomes] |
| rs11846726 | 1.00[ASN][1000 genomes] |
| rs11849053 | 1.00[ASN][1000 genomes] |
| rs11849199 | 0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11849318 | 1.00[ASN][1000 genomes] |
| rs11850498 | 1.00[ASN][1000 genomes] |
| rs3859 | 1.00[ASN][1000 genomes] |
| rs45565842 | 1.00[ASN][1000 genomes] |
| rs58854929 | 1.00[ASN][1000 genomes] |
| rs61977472 | 1.00[ASN][1000 genomes] |
| rs61977473 | 1.00[ASN][1000 genomes] |
| rs61977474 | 1.00[ASN][1000 genomes] |
| rs61977478 | 1.00[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61977479 | 1.00[ASN][1000 genomes] |
| rs61977501 | 1.00[ASN][1000 genomes] |
| rs61977502 | 1.00[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61977508 | 1.00[ASN][1000 genomes] |
| rs61977509 | 1.00[ASN][1000 genomes] |
| rs61977511 | 1.00[ASN][1000 genomes] |
| rs61977535 | 1.00[ASN][1000 genomes] |
| rs61977538 | 1.00[ASN][1000 genomes] |
| rs61977539 | 1.00[ASN][1000 genomes] |
| rs61977540 | 1.00[ASN][1000 genomes] |
| rs61977541 | 1.00[ASN][1000 genomes] |
| rs61977544 | 1.00[ASN][1000 genomes] |
| rs61977549 | 1.00[ASN][1000 genomes] |
| rs61977550 | 1.00[ASN][1000 genomes] |
| rs61977551 | 1.00[ASN][1000 genomes] |
| rs61977554 | 1.00[ASN][1000 genomes] |
| rs61977555 | 1.00[ASN][1000 genomes] |
| rs61978215 | 1.00[ASN][1000 genomes] |
| rs61978216 | 1.00[ASN][1000 genomes] |
| rs61978217 | 1.00[ASN][1000 genomes] |
| rs61978220 | 1.00[ASN][1000 genomes] |
| rs61978221 | 1.00[ASN][1000 genomes] |
| rs61978222 | 1.00[ASN][1000 genomes] |
| rs61978248 | 1.00[ASN][1000 genomes] |
| rs61978250 | 1.00[ASN][1000 genomes] |
| rs61978251 | 1.00[ASN][1000 genomes] |
| rs61978255 | 1.00[ASN][1000 genomes] |
| rs61978257 | 1.00[ASN][1000 genomes] |
| rs61978259 | 1.00[ASN][1000 genomes] |
| rs61979068 | 1.00[ASN][1000 genomes] |
| rs61979070 | 1.00[ASN][1000 genomes] |
| rs61979071 | 1.00[ASN][1000 genomes] |
| rs61979072 | 1.00[ASN][1000 genomes] |
| rs61979075 | 1.00[ASN][1000 genomes] |
| rs61979076 | 1.00[ASN][1000 genomes] |
| rs61979077 | 1.00[ASN][1000 genomes] |
| rs61979078 | 1.00[ASN][1000 genomes] |
| rs61979100 | 1.00[ASN][1000 genomes] |
| rs61979101 | 1.00[ASN][1000 genomes] |
| rs61979102 | 1.00[ASN][1000 genomes] |
| rs61979103 | 1.00[ASN][1000 genomes] |
| rs61979104 | 1.00[ASN][1000 genomes] |
| rs61979105 | 1.00[ASN][1000 genomes] |
| rs61979106 | 1.00[ASN][1000 genomes] |
| rs61979107 | 1.00[ASN][1000 genomes] |
| rs61979126 | 1.00[ASN][1000 genomes] |
| rs61979460 | 1.00[ASN][1000 genomes] |
| rs61979461 | 1.00[ASN][1000 genomes] |
| rs61979462 | 1.00[ASN][1000 genomes] |
| rs61979464 | 1.00[ASN][1000 genomes] |
| rs61979466 | 1.00[ASN][1000 genomes] |
| rs61979467 | 1.00[ASN][1000 genomes] |
| rs61979481 | 1.00[ASN][1000 genomes] |
| rs61979482 | 1.00[ASN][1000 genomes] |
| rs61979483 | 1.00[ASN][1000 genomes] |
| rs61979485 | 1.00[ASN][1000 genomes] |
| rs61979488 | 1.00[ASN][1000 genomes] |
| rs61979502 | 1.00[ASN][1000 genomes] |
| rs61979504 | 1.00[ASN][1000 genomes] |
| rs61979505 | 1.00[ASN][1000 genomes] |
| rs61979512 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs74062899 | 1.00[ASN][1000 genomes] |
| rs74065307 | 1.00[ASN][1000 genomes] |
| rs74065314 | 1.00[ASN][1000 genomes] |
| rs74065331 | 1.00[ASN][1000 genomes] |
| rs8004222 | 1.00[ASN][1000 genomes] |
| rs8013270 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv902075 | chr14:70612618-70919016 | Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 15 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:70735800-70749200 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
| 2 | chr14:70744200-70746800 | Enhancers | ES-UCSF4 Cell Line | embryonic stem cell |
