Variant report

Variant	rs61979071
Chromosome Location	chr14:70883268-70883269
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:70830251..70832228-chr14:70881567..70883391,2	MCF-7	breast:

Extended variants
information (count: 108 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:107)

rs_ID	r²[population]
rs1044538	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11158860	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11620719	1.00[ASN][1000 genomes]
rs11621163	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11621190	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11621272	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11621607	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11621661	1.00[ASN][1000 genomes]
rs11622793	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11622815	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11623663	1.00[ASN][1000 genomes]
rs11624147	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11624309	1.00[ASN][1000 genomes]
rs11624502	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11624706	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11626039	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11626735	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11627167	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11627175	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11627938	1.00[ASN][1000 genomes]
rs11628707	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11629269	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11845636	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11845665	1.00[ASN][1000 genomes]
rs11846101	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11846216	1.00[ASN][1000 genomes]
rs11846726	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11849053	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11849199	1.00[ASN][1000 genomes]
rs11849318	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11850498	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17108204	1.00[ASN][1000 genomes]
rs17108240	1.00[ASN][1000 genomes]
rs17108244	1.00[ASN][1000 genomes]
rs17108245	1.00[ASN][1000 genomes]
rs17176341	1.00[ASN][1000 genomes]
rs17765916	1.00[ASN][1000 genomes]
rs17766006	1.00[ASN][1000 genomes]
rs2153113	1.00[ASN][1000 genomes]
rs2233133	1.00[ASN][1000 genomes]
rs2877683	1.00[ASN][1000 genomes]
rs3859	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45565842	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58854929	1.00[ASN][1000 genomes]
rs60211303	0.80[AMR][1000 genomes]
rs61977472	1.00[ASN][1000 genomes]
rs61977473	1.00[ASN][1000 genomes]
rs61977474	1.00[ASN][1000 genomes]
rs61977478	0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61977479	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61977501	1.00[ASN][1000 genomes]
rs61977502	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61977508	1.00[ASN][1000 genomes]
rs61977509	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61977511	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61977535	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61977538	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61977539	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61977540	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61977541	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61977544	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61977549	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61977550	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61977551	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61977553	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61977554	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61977555	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61979068	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61979070	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61979072	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61979075	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61979076	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61979077	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61979078	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61979100	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61979101	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61979102	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61979103	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61979104	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61979105	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61979106	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61979107	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61979108	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs61979126	1.00[ASN][1000 genomes]
rs61979133	1.00[ASN][1000 genomes]
rs61979135	1.00[ASN][1000 genomes]
rs61979136	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61979137	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61979139	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61979141	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61979485	1.00[ASN][1000 genomes]
rs61979488	1.00[ASN][1000 genomes]
rs61979502	1.00[ASN][1000 genomes]
rs61979504	1.00[ASN][1000 genomes]
rs61979505	1.00[ASN][1000 genomes]
rs61979511	1.00[ASN][1000 genomes]
rs61979512	1.00[ASN][1000 genomes]
rs6573970	1.00[ASN][1000 genomes]
rs7158477	1.00[ASN][1000 genomes]
rs7160692	1.00[ASN][1000 genomes]
rs74062899	1.00[ASN][1000 genomes]
rs74065307	1.00[ASN][1000 genomes]
rs74065314	1.00[ASN][1000 genomes]
rs74065331	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8004222	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8013270	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8017109	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902075	chr14:70612618-70919016	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70882400-70883400	Flanking Active TSS	Dnd41	blood
2	chr14:70882400-70884000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr14:70882400-70884200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr14:70882400-70884200	Active TSS	HUES6 Cell Line	embryonic stem cell
5	chr14:70882400-70884200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr14:70882400-70884400	Active TSS	iPS-20b Cell Line	embryonic stem cell
7	chr14:70882400-70884400	Active TSS	GM12878-XiMat	blood
8	chr14:70882400-70884400	Active TSS	NHLF	lung
9	chr14:70882600-70883400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
10	chr14:70882600-70883800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr14:70882600-70883800	Active TSS	NH-A	brain
12	chr14:70882600-70884000	Active TSS	ES-I3 Cell Line	embryonic stem cell
13	chr14:70882600-70884000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr14:70882600-70884000	Active TSS	iPS-15b Cell Line	embryonic stem cell
15	chr14:70882600-70884000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
16	chr14:70882600-70884000	Active TSS	Fetal Intestine Large	intestine
17	chr14:70882600-70884000	Active TSS	Stomach Smooth Muscle	stomach
18	chr14:70882600-70884200	Active TSS	Muscle Satellite Cultured Cells	--
19	chr14:70882600-70884200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr14:70882600-70884200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr14:70882600-70884200	Active TSS	Brain Cingulate Gyrus	brain
22	chr14:70882600-70884200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
23	chr14:70882600-70884200	Active TSS	Colonic Mucosa	Colon
24	chr14:70882600-70884200	Active TSS	Fetal Stomach	stomach
25	chr14:70882600-70884200	Active TSS	Rectal Mucosa Donor 31	rectum
26	chr14:70882600-70884200	Active TSS	Right Ventricle	heart
27	chr14:70882600-70884400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr14:70882600-70884400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr14:70882600-70884400	Active TSS	Monocytes-CD14+_RO01746	blood
30	chr14:70882800-70883400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
31	chr14:70882800-70883600	Flanking Active TSS	Primary hematopoietic stem cells	blood
32	chr14:70882800-70883600	Active TSS	Fetal Brain Male	brain
33	chr14:70882800-70883800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr14:70882800-70883800	Active TSS	Duodenum Mucosa	Duodenum
35	chr14:70882800-70883800	Active TSS	NHEK	skin
36	chr14:70882800-70884000	Active TSS	H1 Cell Line	embryonic stem cell
37	chr14:70882800-70884000	Active TSS	H9 Cell Line	embryonic stem cell
38	chr14:70882800-70884000	Active TSS	iPS-18 Cell Line	embryonic stem cell
39	chr14:70882800-70884000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr14:70882800-70884000	Active TSS	Aorta	Aorta
41	chr14:70882800-70884000	Active TSS	Brain Anterior Caudate	brain
42	chr14:70882800-70884000	Active TSS	Brain Hippocampus Middle	brain
43	chr14:70882800-70884000	Active TSS	Brain Inferior Temporal Lobe	brain
44	chr14:70882800-70884000	Active TSS	Colon Smooth Muscle	Colon
45	chr14:70882800-70884000	Active TSS	Fetal Intestine Small	intestine
46	chr14:70882800-70884000	Active TSS	Pancreatic Islets	Pancreatic Islet
47	chr14:70882800-70884000	Active TSS	A549	lung
48	chr14:70882800-70884000	Active TSS	Hela-S3	cervix
49	chr14:70882800-70884000	Active TSS	HMEC	breast
50	chr14:70882800-70884200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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