Variant report

Variant	rs61977553
Chromosome Location	chr14:70858107-70858108
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:70852676..70854831-chr14:70856552..70859059,2	MCF-7	breast:

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs1044538	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11158860	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11621163	0.91[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs11621272	0.91[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs11621607	0.91[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs11622793	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11622815	0.91[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs11624147	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11624502	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11624706	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11626039	0.90[AFR][1000 genomes]
rs11626735	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11627167	0.80[AMR][1000 genomes]
rs11627175	0.80[AMR][1000 genomes]
rs11628707	0.91[AFR][1000 genomes]
rs11629269	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11845636	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11846101	0.81[EUR][1000 genomes]
rs11846726	0.80[AMR][1000 genomes]
rs11849053	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11849318	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11850498	0.91[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs3859	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs45565842	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs60211303	0.80[AMR][1000 genomes]
rs61977478	0.96[AMR][1000 genomes]
rs61977479	0.80[AMR][1000 genomes]
rs61977502	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61977509	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61977511	0.80[AMR][1000 genomes]
rs61977535	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61977538	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61977539	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61977540	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61977541	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61977544	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61977549	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61977550	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61977551	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61977554	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61977555	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61979068	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61979070	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61979071	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61979072	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61979075	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61979076	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61979077	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61979078	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61979100	0.91[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs61979101	0.91[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs61979102	0.81[EUR][1000 genomes]
rs61979104	0.81[EUR][1000 genomes]
rs61979105	0.81[EUR][1000 genomes]
rs61979106	0.91[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs61979107	0.81[EUR][1000 genomes]
rs61979108	0.91[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs61979136	0.91[AFR][1000 genomes]
rs61979137	0.91[AFR][1000 genomes]
rs61979139	0.91[AFR][1000 genomes]
rs61979141	0.91[AFR][1000 genomes]
rs74065331	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8004222	0.81[EUR][1000 genomes]
rs8013270	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902075	chr14:70612618-70919016	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70827000-70864200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr14:70827200-70864200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr14:70827200-70864400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr14:70827200-70882600	Weak transcription	A549	lung
5	chr14:70827200-70882600	Weak transcription	NH-A	brain
6	chr14:70832000-70872400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr14:70832200-70864200	Weak transcription	GM12878-XiMat	blood
8	chr14:70833800-70882400	Weak transcription	NHDF-Ad	bronchial
9	chr14:70834000-70858400	Weak transcription	HepG2	liver
10	chr14:70834200-70864600	Weak transcription	Fetal Thymus	thymus
11	chr14:70836000-70864200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr14:70836600-70864600	Weak transcription	Brain Germinal Matrix	brain
13	chr14:70838600-70870000	Weak transcription	NHEK	skin
14	chr14:70838600-70882400	Weak transcription	Hela-S3	cervix
15	chr14:70839600-70858600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr14:70840200-70864200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr14:70840200-70864400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr14:70840200-70864400	Weak transcription	Spleen	Spleen
19	chr14:70840200-70882400	Weak transcription	Colon Smooth Muscle	Colon
20	chr14:70840200-70882600	Weak transcription	Colonic Mucosa	Colon
21	chr14:70840400-70864200	Weak transcription	Lung	lung
22	chr14:70840400-70864200	Weak transcription	Pancreas	Pancrea
23	chr14:70840600-70864200	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr14:70840800-70882800	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr14:70841000-70882600	Weak transcription	Rectal Smooth Muscle	rectum
26	chr14:70841400-70864200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr14:70841400-70879800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr14:70842600-70864200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr14:70842600-70864200	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr14:70842600-70864200	Weak transcription	Aorta	Aorta
31	chr14:70842600-70864200	Weak transcription	Placenta	Placenta
32	chr14:70842600-70864200	Weak transcription	Gastric	stomach
33	chr14:70842600-70864200	Weak transcription	Right Ventricle	heart
34	chr14:70842600-70868600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr14:70842600-70870600	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr14:70842600-70882400	Weak transcription	Fetal Kidney	kidney
37	chr14:70842800-70864200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr14:70842800-70868800	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr14:70846800-70878600	Weak transcription	HSMM	muscle
40	chr14:70848000-70864200	Weak transcription	Fetal Brain Female	brain
41	chr14:70848200-70858400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr14:70848400-70858400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr14:70848400-70858400	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr14:70848400-70863800	Weak transcription	Fetal Lung	lung
45	chr14:70848400-70882400	Weak transcription	Brain Angular Gyrus	brain
46	chr14:70848400-70882800	Weak transcription	Psoas Muscle	Psoas
47	chr14:70848400-70883000	Weak transcription	HSMMtube	muscle
48	chr14:70848600-70864200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr14:70848600-70864200	Weak transcription	Ovary	ovary
50	chr14:70848600-70864200	Weak transcription	Skeletal Muscle Male	skeletal muscle

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