Variant report

Variant	rs61979141
Chromosome Location	chr14:70968226-70968227
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs1044538	1.00[ASN][1000 genomes]
rs11158860	1.00[ASN][1000 genomes]
rs11620719	1.00[ASN][1000 genomes]
rs11621163	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11621190	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11621272	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11621607	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11621661	1.00[ASN][1000 genomes]
rs11622793	1.00[ASN][1000 genomes]
rs11622815	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11624147	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11624502	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11624706	1.00[ASN][1000 genomes]
rs11626039	0.81[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11626735	1.00[ASN][1000 genomes]
rs11627938	1.00[ASN][1000 genomes]
rs11628707	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11629269	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11845636	1.00[ASN][1000 genomes]
rs11846101	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11846216	1.00[ASN][1000 genomes]
rs11849053	1.00[ASN][1000 genomes]
rs11849318	1.00[ASN][1000 genomes]
rs11850498	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17108204	1.00[ASN][1000 genomes]
rs17108240	1.00[ASN][1000 genomes]
rs17108244	1.00[ASN][1000 genomes]
rs17108245	1.00[ASN][1000 genomes]
rs17176341	1.00[ASN][1000 genomes]
rs17765916	1.00[ASN][1000 genomes]
rs17766006	1.00[ASN][1000 genomes]
rs17766042	1.00[ASN][1000 genomes]
rs2153113	1.00[ASN][1000 genomes]
rs2233133	1.00[ASN][1000 genomes]
rs2877683	1.00[ASN][1000 genomes]
rs3859	1.00[ASN][1000 genomes]
rs45565842	1.00[ASN][1000 genomes]
rs58854929	1.00[ASN][1000 genomes]
rs61977501	1.00[ASN][1000 genomes]
rs61977502	1.00[ASN][1000 genomes]
rs61977508	1.00[ASN][1000 genomes]
rs61977509	1.00[ASN][1000 genomes]
rs61977511	1.00[ASN][1000 genomes]
rs61977535	1.00[ASN][1000 genomes]
rs61977538	1.00[ASN][1000 genomes]
rs61977539	1.00[ASN][1000 genomes]
rs61977540	1.00[ASN][1000 genomes]
rs61977541	1.00[ASN][1000 genomes]
rs61977544	1.00[ASN][1000 genomes]
rs61977549	1.00[ASN][1000 genomes]
rs61977550	1.00[ASN][1000 genomes]
rs61977551	1.00[ASN][1000 genomes]
rs61977553	0.91[AFR][1000 genomes]
rs61977554	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61977555	1.00[ASN][1000 genomes]
rs61979068	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61979070	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61979071	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61979072	1.00[ASN][1000 genomes]
rs61979075	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61979076	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61979077	1.00[ASN][1000 genomes]
rs61979078	1.00[ASN][1000 genomes]
rs61979100	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61979101	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61979102	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61979103	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61979104	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61979105	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61979106	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61979107	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61979108	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs61979126	1.00[ASN][1000 genomes]
rs61979133	1.00[ASN][1000 genomes]
rs61979135	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61979136	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61979137	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61979139	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6573970	1.00[ASN][1000 genomes]
rs7158477	1.00[ASN][1000 genomes]
rs7160692	1.00[ASN][1000 genomes]
rs74065307	1.00[ASN][1000 genomes]
rs74065314	1.00[ASN][1000 genomes]
rs74065331	1.00[ASN][1000 genomes]
rs8004222	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8013270	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8017109	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv565042	chr14:70951234-71011734	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1050615	chr14:70954149-71013235	Weak transcription ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv2763072	chr14:70954149-71013247	Strong transcription ZNF genes & repeats Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70958600-70989000	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr14:70958800-70993800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr14:70965200-70982000	Weak transcription	Stomach Smooth Muscle	stomach
4	chr14:70968200-70968400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast

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