Variant report

Variant	rs61979505
Chromosome Location	chr14:70725450-70725451
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:70514161..70515859-chr14:70723794..70725987,2	MCF-7	breast:
2	chr14:70717254..70719398-chr14:70724325..70725965,2	MCF-7	breast:
3	chr14:70192465..70194929-chr14:70723600..70725967,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100650	Chromatin interaction

Extended variants
information (count: 104 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:102)

rs_ID	r²[population]
rs1044538	1.00[ASN][1000 genomes]
rs11158860	1.00[ASN][1000 genomes]
rs11621163	1.00[ASN][1000 genomes]
rs11621272	1.00[ASN][1000 genomes]
rs11621607	1.00[ASN][1000 genomes]
rs11621661	1.00[ASN][1000 genomes]
rs11622793	1.00[ASN][1000 genomes]
rs11623663	1.00[ASN][1000 genomes]
rs11624147	1.00[ASN][1000 genomes]
rs11624309	1.00[ASN][1000 genomes]
rs11624502	1.00[ASN][1000 genomes]
rs11624706	1.00[ASN][1000 genomes]
rs11626735	1.00[ASN][1000 genomes]
rs11627167	1.00[ASN][1000 genomes]
rs11627175	1.00[ASN][1000 genomes]
rs11627938	1.00[ASN][1000 genomes]
rs11629269	1.00[ASN][1000 genomes]
rs11845636	1.00[ASN][1000 genomes]
rs11845665	1.00[ASN][1000 genomes]
rs11846216	1.00[ASN][1000 genomes]
rs11846726	1.00[ASN][1000 genomes]
rs11849053	1.00[ASN][1000 genomes]
rs11849199	1.00[ASN][1000 genomes]
rs11849318	1.00[ASN][1000 genomes]
rs12587023	0.89[EUR][1000 genomes]
rs2022743	0.89[EUR][1000 genomes]
rs3859	1.00[ASN][1000 genomes]
rs45565842	1.00[ASN][1000 genomes]
rs58854929	1.00[ASN][1000 genomes]
rs61977472	1.00[ASN][1000 genomes]
rs61977473	1.00[ASN][1000 genomes]
rs61977474	1.00[ASN][1000 genomes]
rs61977478	1.00[ASN][1000 genomes]
rs61977479	1.00[ASN][1000 genomes]
rs61977501	1.00[ASN][1000 genomes]
rs61977502	1.00[ASN][1000 genomes]
rs61977508	1.00[ASN][1000 genomes]
rs61977509	1.00[ASN][1000 genomes]
rs61977511	1.00[ASN][1000 genomes]
rs61977535	1.00[ASN][1000 genomes]
rs61977538	1.00[ASN][1000 genomes]
rs61977539	1.00[ASN][1000 genomes]
rs61977540	1.00[ASN][1000 genomes]
rs61977541	1.00[ASN][1000 genomes]
rs61977544	1.00[ASN][1000 genomes]
rs61977549	1.00[ASN][1000 genomes]
rs61977550	1.00[ASN][1000 genomes]
rs61977551	1.00[ASN][1000 genomes]
rs61977554	1.00[ASN][1000 genomes]
rs61977555	1.00[ASN][1000 genomes]
rs61978215	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61978216	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61978217	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61978220	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61978221	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61978222	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61978248	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61978250	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61978251	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61978255	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61978257	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61978259	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61979068	1.00[ASN][1000 genomes]
rs61979070	1.00[ASN][1000 genomes]
rs61979071	1.00[ASN][1000 genomes]
rs61979072	1.00[ASN][1000 genomes]
rs61979075	1.00[ASN][1000 genomes]
rs61979076	1.00[ASN][1000 genomes]
rs61979077	1.00[ASN][1000 genomes]
rs61979078	1.00[ASN][1000 genomes]
rs61979100	1.00[ASN][1000 genomes]
rs61979101	1.00[ASN][1000 genomes]
rs61979102	1.00[ASN][1000 genomes]
rs61979103	1.00[ASN][1000 genomes]
rs61979460	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61979461	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61979462	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61979464	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61979466	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61979467	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61979481	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61979482	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61979483	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61979484	0.89[EUR][1000 genomes]
rs61979485	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61979488	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61979490	0.92[EUR][1000 genomes]
rs61979502	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61979504	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61979511	1.00[ASN][1000 genomes]
rs61979512	1.00[ASN][1000 genomes]
rs6573941	0.89[EUR][1000 genomes]
rs6573943	0.89[EUR][1000 genomes]
rs7142682	0.89[EUR][1000 genomes]
rs72625691	0.89[EUR][1000 genomes]
rs74062899	1.00[ASN][1000 genomes]
rs74065307	1.00[ASN][1000 genomes]
rs74065314	1.00[ASN][1000 genomes]
rs74065331	1.00[ASN][1000 genomes]
rs8003965	0.89[EUR][1000 genomes]
rs8004391	0.89[EUR][1000 genomes]
rs8019979	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902075	chr14:70612618-70919016	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv826972	chr14:70717268-70726035	Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70721600-70726600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr14:70722200-70726000	Weak transcription	HepG2	liver
3	chr14:70723800-70744200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr14:70724000-70725800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links