Variant report

Variant	rs61989805
Chromosome Location	chr14:65697588-65697589
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65689494..65692237-chr14:65695472..65698101,2	K562	blood:
2	chr14:65694260..65697862-chr14:65826001..65829124,3	MCF-7	breast:
3	chr14:65682951..65699539-chr14:65874873..65882779,51	MCF-7	breast:
4	chr14:65696604..65698657-chr14:65706204..65708336,3	K562	blood:
5	chr14:65685385..65700060-chr14:65874568..65884730,76	MCF-7	breast:
6	chr14:65693679..65698667-chr14:65701405..65705460,7	MCF-7	breast:
7	chr14:65689123..65699940-chr14:65718655..65726829,32	MCF-7	breast:

Variant related genes	Relation type
ENSG00000258878	Chromatin interaction
ENSG00000033170	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs55722250	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55867601	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55890029	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs58250564	0.83[EUR][1000 genomes]
rs61989800	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61989801	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61989804	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832817	chr14:65637069-65810406	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
2	nsv564933	chr14:65667546-65710580	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65691400-65697600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr14:65691800-65698600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr14:65693400-65704200	Weak transcription	Gastric	stomach
4	chr14:65695400-65698800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr14:65695400-65699000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr14:65696600-65698800	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr14:65696800-65703600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr14:65697000-65697600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr14:65697000-65697600	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr14:65697000-65697600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
11	chr14:65697000-65697600	Enhancers	Placenta Amnion	Placenta Amnion
12	chr14:65697000-65698800	Enhancers	Placenta	Placenta
13	chr14:65697200-65697600	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr14:65697200-65697600	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr14:65697200-65697600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr14:65697200-65697600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr14:65697200-65697600	Enhancers	Fetal Kidney	kidney
18	chr14:65697200-65697600	Enhancers	Fetal Thymus	thymus
19	chr14:65697200-65697600	Enhancers	Pancreas	Pancrea
20	chr14:65697200-65697600	Enhancers	Sigmoid Colon	Sigmoid Colon
21	chr14:65697200-65697600	Enhancers	NH-A	brain
22	chr14:65697200-65698000	Weak transcription	Brain Angular Gyrus	brain
23	chr14:65697200-65698000	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr14:65697200-65698000	Weak transcription	Small Intestine	intestine
25	chr14:65697200-65698200	Enhancers	iPS-20b Cell Line	embryonic stem cell
26	chr14:65697200-65698200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr14:65697200-65698400	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr14:65697200-65698400	Enhancers	Primary hematopoietic stem cells	blood
29	chr14:65697200-65698400	Weak transcription	Left Ventricle	heart
30	chr14:65697200-65698800	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr14:65697200-65698800	Enhancers	Brain Cingulate Gyrus	brain
32	chr14:65697200-65698800	Enhancers	Fetal Lung	lung
33	chr14:65697200-65698800	Enhancers	GM12878-XiMat	blood
34	chr14:65697200-65698800	Enhancers	HMEC	breast
35	chr14:65697200-65699000	Enhancers	Primary B cells from peripheral blood	blood
36	chr14:65697200-65699200	Enhancers	Fetal Intestine Large	intestine
37	chr14:65697200-65699200	Enhancers	Fetal Intestine Small	intestine
38	chr14:65697200-65699200	Enhancers	Stomach Mucosa	stomach
39	chr14:65697200-65703000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr14:65697200-65703200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr14:65697200-65703600	Weak transcription	HSMMtube	muscle
42	chr14:65697200-65704800	Weak transcription	Lung	lung
43	chr14:65697200-65746800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr14:65697400-65697600	Enhancers	ES-I3 Cell Line	embryonic stem cell
45	chr14:65697400-65697600	Enhancers	Primary T helper cells fromperipheralblood	blood
46	chr14:65697400-65697600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr14:65697400-65697600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr14:65697400-65697600	Enhancers	Right Atrium	heart
49	chr14:65697400-65697600	Enhancers	A549	lung
50	chr14:65697400-65697600	Active TSS	HepG2	liver

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