Variant report

Variant	rs61992556
Chromosome Location	chr14:79642447-79642448
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs17595359	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs17595590	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2370933	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs61992527	0.83[ASN][1000 genomes]
rs61992557	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61995405	0.95[ASN][1000 genomes]
rs8007278	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs8008994	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8009200	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs8009489	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs8011043	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8016731	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs8018241	0.95[ASN][1000 genomes]
rs8019477	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041991	chr14:79394408-79644886	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv931412	chr14:79420297-79928269	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1040837	chr14:79583862-79711565	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
4	nsv902110	chr14:79624492-79998294	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79642000-79642600	Enhancers	Fetal Brain Female	brain
2	chr14:79642200-79644200	Enhancers	Fetal Brain Male	brain
3	chr14:79642200-79644200	Enhancers	Fetal Lung	lung
4	chr14:79642400-79642600	Enhancers	Brain Cingulate Gyrus	brain
5	chr14:79642400-79642600	Flanking Active TSS	Colon Smooth Muscle	Colon
6	chr14:79642400-79642600	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
7	chr14:79642400-79642600	Flanking Active TSS	Stomach Smooth Muscle	stomach
8	chr14:79642400-79643000	Enhancers	Brain Inferior Temporal Lobe	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links