Variant report

Variant	rs8019477
Chromosome Location	chr14:79641808-79641809
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11159397	0.90[JPT][hapmap];0.92[YRI][hapmap]
rs11622061	0.93[ASW][hapmap];0.84[TSI][hapmap];0.85[YRI][hapmap]
rs11625020	0.90[JPT][hapmap]
rs11625721	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs11625723	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs11845101	0.88[JPT][hapmap];0.92[YRI][hapmap]
rs12588070	0.81[CEU][hapmap]
rs1531631	0.82[CHD][hapmap];0.90[JPT][hapmap];0.92[YRI][hapmap]
rs1531632	0.82[CHD][hapmap];0.90[JPT][hapmap];0.92[YRI][hapmap]
rs1531633	0.82[CHD][hapmap];0.90[JPT][hapmap];0.92[YRI][hapmap]
rs1531634	0.82[CHD][hapmap];0.90[JPT][hapmap];0.92[YRI][hapmap]
rs17108805	0.90[JPT][hapmap];1.00[YRI][hapmap]
rs17510215	0.81[CHD][hapmap];0.90[JPT][hapmap]
rs17595359	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17595590	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2061920	0.90[JPT][hapmap]
rs2061923	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]
rs2370933	0.81[CEU][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];0.94[MEX][hapmap];0.88[TSI][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2370934	0.84[TSI][hapmap]
rs3921885	0.90[JPT][hapmap]
rs4636834	0.88[CEU][hapmap];0.97[TSI][hapmap];0.85[EUR][1000 genomes]
rs4899736	0.84[TSI][hapmap]
rs61992527	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs61992556	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61992557	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61995405	0.95[ASN][1000 genomes]
rs7151711	0.88[ASW][hapmap];0.86[TSI][hapmap]
rs8004250	0.85[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.92[YRI][hapmap]
rs8006322	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.80[GIH][hapmap];0.82[JPT][hapmap];0.94[MEX][hapmap];0.86[TSI][hapmap]
rs8007278	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8008994	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8009200	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8009489	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8011043	0.95[ASN][1000 genomes]
rs8016731	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8016735	0.88[ASW][hapmap];0.82[MKK][hapmap];0.86[TSI][hapmap]
rs8017544	1.00[CHB][hapmap];0.80[YRI][hapmap]
rs8018241	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[JPT][hapmap];0.95[ASN][1000 genomes]
rs8019231	0.96[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs8021706	0.84[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs8021953	0.85[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041991	chr14:79394408-79644886	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv931412	chr14:79420297-79928269	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1040837	chr14:79583862-79711565	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
4	nsv902110	chr14:79624492-79998294	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs8019477	ANGEL1	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79641800-79642000	Enhancers	Brain Cingulate Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links