Variant report
| Variant | rs11625020 |
|---|---|
| Chromosome Location | chr14:79619355-79619356 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs11159397 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs11845101 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs12590469 | 0.89[CEU][hapmap] |
| rs1531631 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs1531632 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs1531633 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs1531634 | 0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs17108805 | 0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs17510215 | 0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs2061920 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs2061923 | 0.90[JPT][hapmap] |
| rs2199792 | 0.87[CEU][hapmap] |
| rs2370933 | 0.85[YRI][hapmap] |
| rs3921885 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap] |
| rs61992527 | 0.86[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs8006322 | 0.85[YRI][hapmap] |
| rs8008994 | 0.90[JPT][hapmap];0.85[YRI][hapmap] |
| rs8017544 | 0.83[CHB][hapmap] |
| rs8019477 | 0.90[JPT][hapmap] |
| rs8021706 | 0.92[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1041991 | chr14:79394408-79644886 | Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv931412 | chr14:79420297-79928269 | Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | esv2761846 | chr14:79522198-79629157 | Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv1040837 | chr14:79583862-79711565 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
