Variant report

Variant	rs1531633
Chromosome Location	chr14:79635991-79635992
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11159397	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11622061	0.81[ASW][hapmap];0.92[YRI][hapmap]
rs11625020	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11845101	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12588070	0.82[CHB][hapmap]
rs1531631	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs1531632	0.94[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs1531634	0.87[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.84[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs17108805	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]
rs17510215	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap]
rs17595359	0.81[ASN][1000 genomes]
rs2061920	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2061923	0.90[JPT][hapmap];1.00[YRI][hapmap]
rs2370933	0.81[CHD][hapmap]
rs3921885	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs61992527	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61992556	0.83[ASN][1000 genomes]
rs61992557	0.82[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs8004250	0.84[CHB][hapmap];1.00[YRI][hapmap]
rs8006322	0.82[CHD][hapmap]
rs8008994	0.81[CHD][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs8009200	0.81[ASN][1000 genomes]
rs8016731	0.81[ASN][1000 genomes]
rs8017544	0.90[CHB][hapmap];0.89[YRI][hapmap]
rs8018241	0.82[CHD][hapmap]
rs8019477	0.82[CHD][hapmap];0.90[JPT][hapmap];0.92[YRI][hapmap];0.83[ASN][1000 genomes]
rs8021706	0.92[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041991	chr14:79394408-79644886	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv931412	chr14:79420297-79928269	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1040837	chr14:79583862-79711565	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
4	nsv902110	chr14:79624492-79998294	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1531633	ANGEL1	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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