Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11159397	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11622061	0.92[YRI][hapmap]
rs11625020	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1531631	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1531632	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1531633	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1531634	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs17108805	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs17510215	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17595359	0.81[ASN][1000 genomes]
rs2061920	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2061923	0.89[JPT][hapmap];0.91[YRI][hapmap]
rs3921885	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs61992527	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61992556	0.83[ASN][1000 genomes]
rs61992557	0.83[ASN][1000 genomes]
rs8004250	0.86[YRI][hapmap]
rs8008994	0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs8009200	0.81[ASN][1000 genomes]
rs8016731	0.81[ASN][1000 genomes]
rs8017544	0.83[CHB][hapmap]
rs8019477	0.88[JPT][hapmap];0.92[YRI][hapmap];0.83[ASN][1000 genomes]
rs8021706	0.92[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041991	chr14:79394408-79644886	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv931412	chr14:79420297-79928269	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2761846	chr14:79522198-79629157	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1040837	chr14:79583862-79711565	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
5	nsv902110	chr14:79624492-79998294	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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