Variant report

Variant	rs8021706
Chromosome Location	chr14:79654725-79654726
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11159397	0.92[CHB][hapmap]
rs11622061	0.92[CEU][hapmap]
rs11625020	0.92[CHB][hapmap]
rs11625721	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs11625723	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs11845101	0.92[CHB][hapmap]
rs12432016	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs12588070	1.00[CEU][hapmap]
rs1531631	0.92[CHB][hapmap]
rs1531632	0.92[CHB][hapmap]
rs1531633	0.92[CHB][hapmap]
rs1531634	0.92[CHB][hapmap]
rs17108805	0.92[CHB][hapmap]
rs17510215	0.92[CHB][hapmap];0.85[YRI][hapmap]
rs17595359	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17595590	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2061920	0.92[CHB][hapmap]
rs2061923	1.00[CHB][hapmap];0.83[JPT][hapmap]
rs2370933	0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2370934	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs2370935	0.89[CEU][hapmap]
rs3921885	0.91[CHB][hapmap]
rs4636834	0.80[CEU][hapmap]
rs4899736	0.92[CEU][hapmap]
rs61992556	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs61992557	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61995405	0.98[ASN][1000 genomes]
rs7151711	0.92[CEU][hapmap]
rs8004250	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8006322	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs8007278	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8008994	1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs8009200	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8009489	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8011043	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs8016731	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8016735	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs8017399	0.84[EUR][1000 genomes]
rs8017544	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8018241	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs8019477	0.84[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8021953	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931412	chr14:79420297-79928269	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1040837	chr14:79583862-79711565	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
3	nsv902110	chr14:79624492-79998294	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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