Variant report
| Variant | rs12588070 |
|---|---|
| Chromosome Location | chr14:79666284-79666285 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs11622061 | 0.89[CEU][hapmap] |
| rs12432016 | 0.85[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs1531631 | 0.82[CHB][hapmap] |
| rs1531632 | 0.82[CHB][hapmap] |
| rs1531633 | 0.82[CHB][hapmap] |
| rs1531634 | 0.82[CHB][hapmap] |
| rs17510215 | 0.82[CHB][hapmap] |
| rs17595359 | 0.80[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs17595590 | 0.82[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs2370933 | 0.92[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs2370934 | 0.89[CEU][hapmap] |
| rs2370935 | 0.86[CEU][hapmap] |
| rs3921885 | 0.81[CHB][hapmap] |
| rs4899736 | 0.89[CEU][hapmap] |
| rs61992557 | 0.80[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs7151711 | 0.89[CEU][hapmap] |
| rs8004250 | 0.96[CEU][hapmap] |
| rs8006322 | 0.96[CEU][hapmap] |
| rs8007278 | 0.83[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs8009200 | 0.87[EUR][1000 genomes] |
| rs8009489 | 0.80[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs8016731 | 0.85[EUR][1000 genomes] |
| rs8016735 | 0.89[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs8017399 | 0.81[EUR][1000 genomes] |
| rs8019477 | 0.81[CEU][hapmap];0.84[EUR][1000 genomes] |
| rs8021706 | 1.00[CEU][hapmap] |
| rs8021953 | 0.96[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv931412 | chr14:79420297-79928269 | Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv1040837 | chr14:79583862-79711565 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | n/a |
| 3 | nsv902110 | chr14:79624492-79998294 | Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
