Variant report
| Variant | rs8018241 |
|---|---|
| Chromosome Location | chr14:79662678-79662679 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs11625721 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs11625723 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs12432016 | 0.89[YRI][hapmap];0.84[AFR][1000 genomes] |
| rs1531631 | 0.82[CHD][hapmap] |
| rs1531632 | 0.82[CHD][hapmap] |
| rs1531633 | 0.82[CHD][hapmap] |
| rs1531634 | 0.82[CHD][hapmap] |
| rs17510215 | 0.81[CHD][hapmap] |
| rs17595359 | 0.98[ASN][1000 genomes] |
| rs17595590 | 1.00[ASN][1000 genomes] |
| rs2061923 | 1.00[CHB][hapmap];0.82[JPT][hapmap] |
| rs2370933 | 0.86[CHB][hapmap];0.95[CHD][hapmap];0.92[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs61992556 | 0.95[ASN][1000 genomes] |
| rs61992557 | 0.95[ASN][1000 genomes] |
| rs61995405 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7151711 | 0.89[YRI][hapmap] |
| rs8004250 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs8006322 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap] |
| rs8007278 | 1.00[ASN][1000 genomes] |
| rs8008994 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs8009200 | 0.98[ASN][1000 genomes] |
| rs8009489 | 0.90[ASN][1000 genomes] |
| rs8011043 | 1.00[ASN][1000 genomes] |
| rs8016731 | 0.98[ASN][1000 genomes] |
| rs8016735 | 0.89[YRI][hapmap];0.84[AFR][1000 genomes] |
| rs8017399 | 0.82[AFR][1000 genomes] |
| rs8017544 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs8019477 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs8021706 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs8021953 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv931412 | chr14:79420297-79928269 | Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv1040837 | chr14:79583862-79711565 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | n/a |
| 3 | nsv902110 | chr14:79624492-79998294 | Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 4 | nsv827002 | chr14:79654898-79665722 | Enhancers Weak transcription | TF binding region | 1 gene(s) | inside rSNPs | n/a |
| 5 | esv2757579 | chr14:79658731-79665685 | Weak transcription Enhancers | TF binding region | 1 gene(s) | inside rSNPs | n/a |
| 6 | esv2760001 | chr14:79658731-79665685 | Enhancers Weak transcription | TF binding region | 1 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:79662400-79664200 | Enhancers | Foreskin Melanocyte Primary Cells skin03 | Skin |
