Variant report

Variant	rs62001698
Chromosome Location	chr15:58636563-58636564
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10438284	0.85[ASN][1000 genomes]
rs10518973	0.82[EUR][1000 genomes]
rs11071372	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11854016	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11855842	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12148283	0.82[EUR][1000 genomes]
rs12324543	0.80[EUR][1000 genomes]
rs16940116	0.91[EUR][1000 genomes]
rs2115907	0.85[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs261329	0.81[EUR][1000 genomes]
rs28604545	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28842782	0.82[EUR][1000 genomes]
rs454499	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62001709	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62001710	0.92[EUR][1000 genomes]
rs62001712	0.82[EUR][1000 genomes]
rs62001732	0.80[EUR][1000 genomes]
rs68077377	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047246	chr15:58375607-58707158	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv529717	chr15:58519923-58756814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1042201	chr15:58520746-58780710	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv569598	chr15:58552606-58852463	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	nsv904266	chr15:58580921-58689187	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv1041779	chr15:58634768-58662280	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58625000-58643200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr15:58626000-58638200	Weak transcription	HSMMtube	muscle
3	chr15:58626200-58638400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr15:58627200-58638200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr15:58629800-58638400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr15:58632800-58638200	Weak transcription	HSMM	muscle
7	chr15:58632800-58638200	Weak transcription	NHDF-Ad	bronchial
8	chr15:58634400-58636600	Enhancers	K562	blood
9	chr15:58634400-58640400	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr15:58634600-58638800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr15:58635600-58638400	Enhancers	A549	lung
12	chr15:58635600-58638600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr15:58635800-58638200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr15:58636000-58637200	Weak transcription	NHLF	lung
15	chr15:58636000-58638800	Enhancers	Placenta Amnion	Placenta Amnion
16	chr15:58636200-58638400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr15:58636200-58638400	Enhancers	Fetal Thymus	thymus
18	chr15:58636400-58636600	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr15:58636400-58637200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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