Variant report

Variant	rs62007278
Chromosome Location	chr15:77700420-77700421
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:77700084..77701630-chr15:77707595..77709456,2	K562	blood:

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10519165	0.89[ASN][1000 genomes]
rs10519166	0.89[ASN][1000 genomes]
rs12898506	0.89[ASN][1000 genomes]
rs12898522	0.89[ASN][1000 genomes]
rs12901298	0.89[ASN][1000 genomes]
rs12905548	0.89[ASN][1000 genomes]
rs12905890	0.89[ASN][1000 genomes]
rs12906093	0.89[ASN][1000 genomes]
rs12906155	0.89[ASN][1000 genomes]
rs12906220	0.89[ASN][1000 genomes]
rs12909547	0.89[ASN][1000 genomes]
rs12909771	0.89[ASN][1000 genomes]
rs12910225	0.89[ASN][1000 genomes]
rs12914885	0.89[ASN][1000 genomes]
rs12917103	0.89[ASN][1000 genomes]
rs12917143	0.89[ASN][1000 genomes]
rs12917211	0.89[ASN][1000 genomes]
rs12917347	0.89[ASN][1000 genomes]
rs12917359	0.89[ASN][1000 genomes]
rs16968817	0.89[ASN][1000 genomes]
rs16968829	0.89[ASN][1000 genomes]
rs16968848	0.89[ASN][1000 genomes]
rs16968851	0.89[ASN][1000 genomes]
rs17386174	0.89[ASN][1000 genomes]
rs17469938	0.89[ASN][1000 genomes]
rs17471280	0.89[ASN][1000 genomes]
rs17471809	0.89[ASN][1000 genomes]
rs17472416	0.89[ASN][1000 genomes]
rs1949269	0.89[ASN][1000 genomes]
rs2036896	0.89[ASN][1000 genomes]
rs2864841	0.89[ASN][1000 genomes]
rs34023254	0.89[ASN][1000 genomes]
rs34158220	0.89[ASN][1000 genomes]
rs34197100	0.89[ASN][1000 genomes]
rs34237392	0.89[ASN][1000 genomes]
rs34344208	0.89[ASN][1000 genomes]
rs34410684	0.89[ASN][1000 genomes]
rs34607003	0.87[ASN][1000 genomes]
rs34660075	0.89[ASN][1000 genomes]
rs34664675	0.89[ASN][1000 genomes]
rs34665451	0.89[ASN][1000 genomes]
rs34690222	0.89[ASN][1000 genomes]
rs34772392	0.89[ASN][1000 genomes]
rs34858590	0.89[ASN][1000 genomes]
rs34905779	0.89[ASN][1000 genomes]
rs35015654	0.89[ASN][1000 genomes]
rs35277326	0.89[ASN][1000 genomes]
rs35347401	0.89[ASN][1000 genomes]
rs35383172	1.00[ASN][1000 genomes]
rs35420345	0.89[ASN][1000 genomes]
rs35450609	0.89[ASN][1000 genomes]
rs35628983	0.89[ASN][1000 genomes]
rs35775156	0.89[ASN][1000 genomes]
rs35778082	0.89[ASN][1000 genomes]
rs35834995	0.89[ASN][1000 genomes]
rs35892909	0.89[ASN][1000 genomes]
rs36103772	0.89[ASN][1000 genomes]
rs4288963	0.89[ASN][1000 genomes]
rs4349115	0.89[ASN][1000 genomes]
rs62007266	0.89[ASN][1000 genomes]
rs62007269	0.89[ASN][1000 genomes]
rs62007303	0.89[ASN][1000 genomes]
rs62007307	0.89[ASN][1000 genomes]
rs62007310	0.89[ASN][1000 genomes]
rs62007313	0.89[ASN][1000 genomes]
rs62007316	0.89[ASN][1000 genomes]
rs62007337	0.89[ASN][1000 genomes]
rs62007338	0.89[ASN][1000 genomes]
rs62007339	0.89[ASN][1000 genomes]
rs62007343	0.89[ASN][1000 genomes]
rs62010561	0.89[ASN][1000 genomes]
rs62010567	0.89[ASN][1000 genomes]
rs72742499	0.89[ASN][1000 genomes]
rs8031202	0.89[ASN][1000 genomes]
rs907399	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv1045376	chr15:77354671-77801487	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv542443	chr15:77354671-77801487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv916323	chr15:77485765-78121259	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv482689	chr15:77576396-77731559	Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	esv1792043	chr15:77664901-77708316	Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77675000-77709400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr15:77691600-77703000	Weak transcription	Fetal Heart	heart
3	chr15:77695600-77701600	Weak transcription	GM12878-XiMat	blood
4	chr15:77695600-77701800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr15:77695600-77701800	Weak transcription	Brain Angular Gyrus	brain
6	chr15:77695600-77702200	Weak transcription	K562	blood
7	chr15:77695600-77702400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr15:77695600-77705000	Weak transcription	HSMMtube	muscle
9	chr15:77695600-77707800	Weak transcription	NHLF	lung
10	chr15:77695600-77709200	Weak transcription	HMEC	breast
11	chr15:77695800-77701600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr15:77695800-77709400	Weak transcription	Colon Smooth Muscle	Colon
13	chr15:77696200-77708200	Weak transcription	HSMM	muscle
14	chr15:77696400-77701600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr15:77696400-77701800	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr15:77696800-77701800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr15:77696800-77701800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr15:77696800-77702000	Weak transcription	Osteobl	bone
19	chr15:77696800-77708000	Weak transcription	NHDF-Ad	bronchial
20	chr15:77697000-77701600	Weak transcription	Primary T cells from cord blood	blood
21	chr15:77697400-77701800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr15:77698400-77701600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr15:77698600-77701600	Weak transcription	Primary hematopoietic stem cells	blood
24	chr15:77698600-77701800	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr15:77698600-77711200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr15:77698800-77701600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr15:77698800-77702400	Weak transcription	Psoas Muscle	Psoas
28	chr15:77699000-77708000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr15:77699200-77701400	Weak transcription	Primary B cells from cord blood	blood
30	chr15:77699200-77701800	Weak transcription	Primary T helper cells PMA-I stimulated	--
31	chr15:77699400-77702400	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr15:77699800-77701200	Weak transcription	Primary B cells from peripheral blood	blood
33	chr15:77699800-77702600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr15:77700000-77703000	Weak transcription	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links