Variant report

Variant	rs62008321
Chromosome Location	chr15:45986855-45986856
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:45980031..45981543-chr15:45985356..45987989,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10643	1.00[ASN][1000 genomes]
rs11629585	1.00[ASN][1000 genomes]
rs11634640	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2139647	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2413787	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56108595	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62006179	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62008310	1.00[ASN][1000 genomes]
rs62008318	1.00[ASN][1000 genomes]
rs62008319	1.00[ASN][1000 genomes]
rs62008320	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72715101	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904189	chr15:45821158-46298458	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv904191	chr15:45902779-46381874	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:45950600-45988400	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr15:45960200-45987800	Strong transcription	Primary monocytes fromperipheralblood	blood
3	chr15:45960400-45987000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr15:45960400-45988200	Strong transcription	Rectal Mucosa Donor 31	rectum
5	chr15:45960600-45987200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr15:45960800-45987000	Strong transcription	Liver	Liver
7	chr15:45961800-45987000	Strong transcription	Stomach Smooth Muscle	stomach
8	chr15:45968800-45989600	Weak transcription	Placenta	Placenta
9	chr15:45970400-45988200	Strong transcription	Sigmoid Colon	Sigmoid Colon
10	chr15:45971000-45989000	Strong transcription	Primary neutrophils fromperipheralblood	blood
11	chr15:45975400-45989400	Weak transcription	HepG2	liver
12	chr15:45977800-45988200	Weak transcription	Stomach Mucosa	stomach
13	chr15:45983200-45990800	Weak transcription	Small Intestine	intestine
14	chr15:45983200-45991800	Weak transcription	A549	lung
15	chr15:45983200-45996000	Weak transcription	Colon Smooth Muscle	Colon
16	chr15:45983400-45987800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr15:45983400-45987800	Weak transcription	Fetal Thymus	thymus
18	chr15:45983400-45996800	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr15:45983600-45996400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr15:45983800-45988400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr15:45983800-45994600	Weak transcription	Ovary	ovary
22	chr15:45983800-45996200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr15:45984000-45989400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr15:45984000-45990200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr15:45984000-45994400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr15:45984200-45987400	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr15:45984200-45991000	Weak transcription	Left Ventricle	heart
28	chr15:45984200-45994200	Weak transcription	NHEK	skin
29	chr15:45984200-45995400	Weak transcription	Psoas Muscle	Psoas
30	chr15:45984200-45996200	Weak transcription	Fetal Stomach	stomach
31	chr15:45984200-45996200	Weak transcription	NHDF-Ad	bronchial
32	chr15:45984400-45996400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr15:45985200-45991400	Weak transcription	Fetal Intestine Large	intestine
34	chr15:45985200-45996200	Weak transcription	Primary T helper cells PMA-I stimulated	--
35	chr15:45985400-45996400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr15:45985400-45996800	Weak transcription	HMEC	breast
37	chr15:45985600-45994400	Weak transcription	Pancreas	Pancrea
38	chr15:45985800-45988800	Weak transcription	Primary T cells from cord blood	blood
39	chr15:45985800-45989400	Weak transcription	Thymus	Thymus
40	chr15:45985800-45994400	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr15:45985800-45995800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr15:45985800-45995800	Weak transcription	GM12878-XiMat	blood
43	chr15:45985800-45996200	Weak transcription	Gastric	stomach
44	chr15:45985800-45996400	Weak transcription	Primary T helper cells fromperipheralblood	blood
45	chr15:45985800-45996400	Weak transcription	Adipose Nuclei	Adipose
46	chr15:45985800-45996400	Weak transcription	Right Ventricle	heart
47	chr15:45986000-45987400	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr15:45986000-45988800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr15:45986000-45992800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr15:45986000-45993800	Weak transcription	Primary B cells from peripheral blood	blood

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