Variant report

Variant	rs62040149
Chromosome Location	chr16:79998305-79998306
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:79994776..79997639-chr16:79998241..80000417,2	MCF-7	breast:
2	chr16:79997764..79999359-chr16:80003629..80005763,2	K562	blood:
3	chr16:79992664..79995128-chr16:79995327..79998664,3	K562	blood:
4	chr16:79998134..80000055-chr16:80005510..80007697,2	MCF-7	breast:

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs11640073	0.80[EUR][1000 genomes]
rs11640447	0.83[EUR][1000 genomes]
rs16951740	0.86[EUR][1000 genomes]
rs16951741	0.86[EUR][1000 genomes]
rs16951780	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16951782	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16951797	0.95[EUR][1000 genomes]
rs16951799	0.98[EUR][1000 genomes]
rs16951801	0.98[EUR][1000 genomes]
rs16951803	0.95[EUR][1000 genomes]
rs16951814	0.98[EUR][1000 genomes]
rs16951838	0.98[EUR][1000 genomes]
rs16951842	0.98[EUR][1000 genomes]
rs16951843	0.98[EUR][1000 genomes]
rs16951873	0.95[EUR][1000 genomes]
rs16951897	0.95[EUR][1000 genomes]
rs16951906	0.95[EUR][1000 genomes]
rs34819814	0.98[EUR][1000 genomes]
rs4243193	0.98[EUR][1000 genomes]
rs4243195	0.98[EUR][1000 genomes]
rs4300657	0.98[EUR][1000 genomes]
rs4337307	0.98[EUR][1000 genomes]
rs4337308	0.98[EUR][1000 genomes]
rs4344762	0.98[EUR][1000 genomes]
rs4371170	0.98[EUR][1000 genomes]
rs4398121	0.98[EUR][1000 genomes]
rs4429310	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4430760	0.98[EUR][1000 genomes]
rs4473201	0.95[EUR][1000 genomes]
rs4474699	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4591155	0.98[EUR][1000 genomes]
rs4600478	0.98[EUR][1000 genomes]
rs4600479	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4613081	0.98[EUR][1000 genomes]
rs4643335	0.98[EUR][1000 genomes]
rs4889057	0.92[EUR][1000 genomes]
rs4889058	0.94[EUR][1000 genomes]
rs4889060	0.98[EUR][1000 genomes]
rs55854128	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62040147	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62040150	1.00[EUR][1000 genomes]
rs62040151	0.98[EUR][1000 genomes]
rs62040152	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62040153	0.98[EUR][1000 genomes]
rs62040154	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62040155	0.98[EUR][1000 genomes]
rs62040157	0.98[EUR][1000 genomes]
rs62040158	0.98[EUR][1000 genomes]
rs62040159	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62042260	0.98[EUR][1000 genomes]
rs62042261	0.98[EUR][1000 genomes]
rs62042262	0.98[EUR][1000 genomes]
rs62042264	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62042286	0.95[EUR][1000 genomes]
rs62042287	0.95[EUR][1000 genomes]
rs62042288	0.95[EUR][1000 genomes]
rs62042290	0.92[EUR][1000 genomes]
rs62042291	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62042292	0.92[EUR][1000 genomes]
rs62042293	0.95[EUR][1000 genomes]
rs62042294	0.95[EUR][1000 genomes]
rs62042295	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62042296	0.94[EUR][1000 genomes]
rs62042298	0.80[EUR][1000 genomes]
rs62042299	0.80[EUR][1000 genomes]
rs62042300	0.80[EUR][1000 genomes]
rs62042301	0.80[EUR][1000 genomes]
rs62042302	0.80[EUR][1000 genomes]
rs62043708	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62043709	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62043712	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62043714	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62043715	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62043716	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7195573	0.80[EUR][1000 genomes]
rs7204058	0.98[EUR][1000 genomes]
rs7204532	0.98[EUR][1000 genomes]
rs74038404	0.98[EUR][1000 genomes]
rs8044242	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8044773	0.95[EUR][1000 genomes]
rs9674229	0.86[EUR][1000 genomes]
rs9788879	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:79997000-80006200	Weak transcription	Right Atrium	heart
2	chr16:79997800-79998400	Enhancers	Fetal Brain Male	brain
3	chr16:79998000-80000000	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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