Variant report

Variant	rs62043708
Chromosome Location	chr16:79977248-79977249
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:79974991..79977318-chr16:79978031..79980888,2	MCF-7	breast:

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs16951740	0.89[EUR][1000 genomes]
rs16951741	0.89[EUR][1000 genomes]
rs16951780	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16951782	0.84[AMR][1000 genomes]
rs16951797	0.81[EUR][1000 genomes]
rs16951799	0.83[EUR][1000 genomes]
rs16951801	0.83[EUR][1000 genomes]
rs16951803	0.81[EUR][1000 genomes]
rs16951814	0.83[EUR][1000 genomes]
rs16951838	0.83[EUR][1000 genomes]
rs16951842	0.83[EUR][1000 genomes]
rs16951843	0.83[EUR][1000 genomes]
rs16951873	0.81[EUR][1000 genomes]
rs16951897	0.81[EUR][1000 genomes]
rs16951906	0.81[EUR][1000 genomes]
rs34819814	0.83[EUR][1000 genomes]
rs4243193	0.83[EUR][1000 genomes]
rs4243195	0.83[EUR][1000 genomes]
rs4300657	0.83[EUR][1000 genomes]
rs4337307	0.83[EUR][1000 genomes]
rs4337308	0.83[EUR][1000 genomes]
rs4344762	0.83[EUR][1000 genomes]
rs4371170	0.83[EUR][1000 genomes]
rs4398121	0.83[EUR][1000 genomes]
rs4429310	0.83[EUR][1000 genomes]
rs4430760	0.83[EUR][1000 genomes]
rs4473201	0.81[EUR][1000 genomes]
rs4474699	0.81[EUR][1000 genomes]
rs4591155	0.83[EUR][1000 genomes]
rs4600478	0.83[EUR][1000 genomes]
rs4600479	0.83[EUR][1000 genomes]
rs4613081	0.83[EUR][1000 genomes]
rs4643335	0.83[EUR][1000 genomes]
rs4889057	0.84[EUR][1000 genomes]
rs4889058	0.82[EUR][1000 genomes]
rs4889060	0.83[EUR][1000 genomes]
rs55854128	0.84[EUR][1000 genomes]
rs62040147	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62040149	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62040150	0.82[EUR][1000 genomes]
rs62040151	0.83[EUR][1000 genomes]
rs62040152	0.83[EUR][1000 genomes]
rs62040153	0.83[EUR][1000 genomes]
rs62040154	0.83[EUR][1000 genomes]
rs62040155	0.83[EUR][1000 genomes]
rs62040157	0.83[EUR][1000 genomes]
rs62040158	0.83[EUR][1000 genomes]
rs62040159	0.83[EUR][1000 genomes]
rs62042260	0.83[EUR][1000 genomes]
rs62042261	0.83[EUR][1000 genomes]
rs62042262	0.83[EUR][1000 genomes]
rs62042264	0.81[EUR][1000 genomes]
rs62042286	0.81[EUR][1000 genomes]
rs62042287	0.81[EUR][1000 genomes]
rs62042288	0.81[EUR][1000 genomes]
rs62042291	0.81[EUR][1000 genomes]
rs62042293	0.81[EUR][1000 genomes]
rs62042294	0.81[EUR][1000 genomes]
rs62042295	0.81[EUR][1000 genomes]
rs62043709	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62043712	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62043714	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62043715	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62043716	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7204058	0.83[EUR][1000 genomes]
rs7204532	0.83[EUR][1000 genomes]
rs74038404	0.83[EUR][1000 genomes]
rs8044242	0.81[EUR][1000 genomes]
rs8044773	0.81[EUR][1000 genomes]
rs9674229	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv1061519	chr16:79976222-79987278	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:79977000-79978200	Enhancers	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links