Variant report

Variant	rs62042264
Chromosome Location	chr16:80007176-80007177
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:80005070..80008604-chr16:80010257..80012761,6	K562	blood:
2	chr16:80005028..80007365-chr16:80012066..80013670,2	K562	blood:
3	chr16:79998134..80000055-chr16:80005510..80007697,2	MCF-7	breast:
4	chr16:80006779..80009506-chr16:80009567..80011712,2	MCF-7	breast:
5	chr16:79978107..79980812-chr16:80004750..80007386,2	K562	blood:
6	chr16:79870162..79872603-chr16:80005430..80007622,2	K562	blood:
7	chr16:80006211..80008346-chr16:80008458..80011318,2	K562	blood:
8	chr16:79998660..80002282-chr16:80003474..80007904,4	K562	blood:

No data

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs11640073	0.84[EUR][1000 genomes]
rs11640447	0.87[EUR][1000 genomes]
rs16951740	0.85[EUR][1000 genomes]
rs16951741	0.85[EUR][1000 genomes]
rs16951780	0.81[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs16951782	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs16951797	0.94[EUR][1000 genomes]
rs16951799	0.97[EUR][1000 genomes]
rs16951801	0.97[EUR][1000 genomes]
rs16951803	0.94[EUR][1000 genomes]
rs16951814	0.97[EUR][1000 genomes]
rs16951838	0.97[EUR][1000 genomes]
rs16951842	0.97[EUR][1000 genomes]
rs16951843	0.97[EUR][1000 genomes]
rs16951873	1.00[EUR][1000 genomes]
rs16951897	1.00[EUR][1000 genomes]
rs16951906	1.00[EUR][1000 genomes]
rs34819814	0.97[EUR][1000 genomes]
rs4243193	0.97[EUR][1000 genomes]
rs4243195	0.97[EUR][1000 genomes]
rs4300657	0.97[EUR][1000 genomes]
rs4337307	0.97[EUR][1000 genomes]
rs4337308	0.97[EUR][1000 genomes]
rs4344762	0.97[EUR][1000 genomes]
rs4371170	0.97[EUR][1000 genomes]
rs4398121	0.97[EUR][1000 genomes]
rs4429310	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4430760	0.97[EUR][1000 genomes]
rs4473201	1.00[EUR][1000 genomes]
rs4474699	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4591155	0.97[EUR][1000 genomes]
rs4600478	0.97[EUR][1000 genomes]
rs4600479	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4613081	0.97[EUR][1000 genomes]
rs4643335	0.97[EUR][1000 genomes]
rs4889057	0.91[EUR][1000 genomes]
rs4889058	0.92[EUR][1000 genomes]
rs4889060	0.97[EUR][1000 genomes]
rs4889063	0.83[EUR][1000 genomes]
rs62040147	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62040149	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62040150	0.95[EUR][1000 genomes]
rs62040151	0.97[EUR][1000 genomes]
rs62040152	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62040153	0.97[EUR][1000 genomes]
rs62040154	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62040155	0.97[EUR][1000 genomes]
rs62040157	0.97[EUR][1000 genomes]
rs62040158	0.97[EUR][1000 genomes]
rs62040159	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62042260	0.97[EUR][1000 genomes]
rs62042261	0.97[EUR][1000 genomes]
rs62042262	0.97[EUR][1000 genomes]
rs62042286	1.00[EUR][1000 genomes]
rs62042287	1.00[EUR][1000 genomes]
rs62042288	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62042290	0.97[EUR][1000 genomes]
rs62042291	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62042292	0.97[EUR][1000 genomes]
rs62042293	1.00[EUR][1000 genomes]
rs62042294	1.00[EUR][1000 genomes]
rs62042295	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62042296	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62042298	0.84[EUR][1000 genomes]
rs62042299	0.84[EUR][1000 genomes]
rs62042300	0.84[EUR][1000 genomes]
rs62042301	0.84[EUR][1000 genomes]
rs62042302	0.84[EUR][1000 genomes]
rs62042323	0.81[EUR][1000 genomes]
rs62043708	0.81[EUR][1000 genomes]
rs62043709	0.81[EUR][1000 genomes]
rs62043712	0.88[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs62043714	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs62043715	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62043716	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs7195573	0.84[EUR][1000 genomes]
rs7204058	0.97[EUR][1000 genomes]
rs7204532	0.97[EUR][1000 genomes]
rs74038404	0.97[EUR][1000 genomes]
rs8044242	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8044773	1.00[EUR][1000 genomes]
rs9674229	0.85[EUR][1000 genomes]
rs9788812	0.83[EUR][1000 genomes]
rs9788879	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv573294	chr16:80005642-80131944	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80006400-80015000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr16:80006600-80008400	Enhancers	K562	blood

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