Variant report

Variant	rs9788812
Chromosome Location	chr16:80019032-80019033
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10514477	0.93[EUR][1000 genomes]
rs11640073	0.99[EUR][1000 genomes]
rs11640447	0.96[EUR][1000 genomes]
rs16951873	0.83[EUR][1000 genomes]
rs16951897	0.83[EUR][1000 genomes]
rs16951906	0.83[EUR][1000 genomes]
rs16951938	0.98[ASN][1000 genomes]
rs4473201	0.83[EUR][1000 genomes]
rs4474699	0.83[EUR][1000 genomes]
rs4889063	1.00[EUR][1000 genomes]
rs58399708	0.84[EUR][1000 genomes]
rs62042264	0.83[EUR][1000 genomes]
rs62042286	0.83[EUR][1000 genomes]
rs62042287	0.83[EUR][1000 genomes]
rs62042288	0.83[EUR][1000 genomes]
rs62042291	0.83[EUR][1000 genomes]
rs62042292	0.80[EUR][1000 genomes]
rs62042293	0.83[EUR][1000 genomes]
rs62042294	0.83[EUR][1000 genomes]
rs62042295	0.83[EUR][1000 genomes]
rs62042296	0.81[EUR][1000 genomes]
rs62042298	0.99[EUR][1000 genomes]
rs62042299	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62042300	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62042301	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62042302	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62042303	0.98[ASN][1000 genomes]
rs62042304	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62042323	0.96[EUR][1000 genomes]
rs7190101	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7192124	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7195573	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8044242	0.83[EUR][1000 genomes]
rs8044773	0.83[EUR][1000 genomes]
rs8053286	0.86[EUR][1000 genomes]
rs9319546	0.93[EUR][1000 genomes]
rs9788879	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9788937	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv573294	chr16:80005642-80131944	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80015400-80020000	Weak transcription	HMEC	breast
2	chr16:80018600-80019800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr16:80019000-80019600	Weak transcription	Fetal Lung	lung

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