Variant report

Variant	rs10514477
Chromosome Location	chr16:80024839-80024840
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11640073	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11640447	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4889063	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58399708	0.80[EUR][1000 genomes]
rs62042298	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62042299	0.94[EUR][1000 genomes]
rs62042300	0.94[EUR][1000 genomes]
rs62042301	0.94[EUR][1000 genomes]
rs62042302	0.94[EUR][1000 genomes]
rs62042304	1.00[EUR][1000 genomes]
rs62042323	0.97[EUR][1000 genomes]
rs7190101	1.00[EUR][1000 genomes]
rs7192124	1.00[EUR][1000 genomes]
rs7195573	0.94[EUR][1000 genomes]
rs8053286	0.87[EUR][1000 genomes]
rs9319546	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9788812	0.93[EUR][1000 genomes]
rs9788879	0.94[EUR][1000 genomes]
rs9788937	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv573294	chr16:80005642-80131944	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80022800-80025200	Weak transcription	Fetal Intestine Small	intestine
2	chr16:80023200-80026200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr16:80023600-80025800	Weak transcription	Fetal Intestine Large	intestine
4	chr16:80023600-80026600	Weak transcription	Duodenum Mucosa	Duodenum
5	chr16:80023800-80027200	Weak transcription	K562	blood
6	chr16:80024000-80025800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr16:80024000-80026200	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr16:80024000-80027800	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr16:80024000-80028400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links