Variant report

Variant	rs9319546
Chromosome Location	chr16:80023900-80023901
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10514477	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11640073	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11640447	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4889063	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58399708	0.80[EUR][1000 genomes]
rs62042298	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62042299	0.94[EUR][1000 genomes]
rs62042300	0.94[EUR][1000 genomes]
rs62042301	0.94[EUR][1000 genomes]
rs62042302	0.94[EUR][1000 genomes]
rs62042304	1.00[EUR][1000 genomes]
rs62042323	0.97[EUR][1000 genomes]
rs7190101	1.00[EUR][1000 genomes]
rs7192124	1.00[EUR][1000 genomes]
rs7195573	0.94[EUR][1000 genomes]
rs8053286	0.87[EUR][1000 genomes]
rs9788812	0.93[EUR][1000 genomes]
rs9788879	0.94[EUR][1000 genomes]
rs9788937	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv573294	chr16:80005642-80131944	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80022600-80024000	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr16:80022800-80024000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr16:80022800-80024000	Enhancers	Fetal Lung	lung
4	chr16:80022800-80025200	Weak transcription	Fetal Intestine Small	intestine
5	chr16:80023000-80024000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr16:80023000-80024000	Enhancers	Placenta Amnion	Placenta Amnion
7	chr16:80023200-80024600	Enhancers	Primary hematopoietic stem cells	blood
8	chr16:80023200-80026200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr16:80023600-80025800	Weak transcription	Fetal Intestine Large	intestine
10	chr16:80023600-80026600	Weak transcription	Duodenum Mucosa	Duodenum
11	chr16:80023800-80024000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr16:80023800-80024000	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr16:80023800-80027200	Weak transcription	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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