Variant report

Variant	rs62043764
Chromosome Location	chr15:56161105-56161106
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11550869	0.96[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs12898553	1.00[ASN][1000 genomes]
rs17238461	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17238482	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17238489	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17819282	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17819300	0.89[ASN][1000 genomes]
rs55782406	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62043760	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62043761	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62043763	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62043792	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62043793	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62043796	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62043801	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62043802	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62043810	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62043815	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62043816	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62043847	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62043854	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62046605	0.96[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs62046606	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62046641	0.96[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs62046642	0.96[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs62046643	0.96[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs62046644	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62046645	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62046648	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62046649	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62046650	0.92[AFR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv457157	chr15:55722213-56255774	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv569539	chr15:55722213-56255774	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56116800-56162200	Weak transcription	Fetal Heart	heart
2	chr15:56132000-56164800	Weak transcription	Small Intestine	intestine
3	chr15:56138200-56161800	Weak transcription	K562	blood
4	chr15:56148200-56174400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr15:56148800-56161800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr15:56149000-56163600	Weak transcription	Gastric	stomach
7	chr15:56149000-56164800	Weak transcription	Aorta	Aorta
8	chr15:56149000-56177600	Weak transcription	Spleen	Spleen
9	chr15:56152400-56164800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr15:56152800-56165000	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr15:56152800-56174600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr15:56153000-56163200	Weak transcription	Fetal Muscle Trunk	muscle
13	chr15:56153000-56163800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr15:56153000-56164800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr15:56153000-56164800	Weak transcription	Ovary	ovary
16	chr15:56153000-56167400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr15:56153000-56174000	Weak transcription	Primary hematopoietic stem cells	blood
18	chr15:56153000-56174400	Weak transcription	HSMMtube	muscle
19	chr15:56153000-56174800	Weak transcription	Fetal Intestine Small	intestine
20	chr15:56153000-56176400	Weak transcription	Esophagus	oesophagus
21	chr15:56153600-56178600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr15:56153800-56165600	Weak transcription	HMEC	breast
23	chr15:56154400-56162600	Weak transcription	NHDF-Ad	bronchial
24	chr15:56154400-56164800	Weak transcription	Psoas Muscle	Psoas
25	chr15:56154400-56164800	Weak transcription	NH-A	brain
26	chr15:56155400-56165200	Weak transcription	Fetal Intestine Large	intestine
27	chr15:56155400-56174800	Weak transcription	Primary neutrophils fromperipheralblood	blood
28	chr15:56155400-56175600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr15:56155600-56161200	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr15:56156200-56165600	Strong transcription	HSMM	muscle
31	chr15:56158200-56161200	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr15:56158200-56161800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr15:56158200-56164800	Weak transcription	Osteobl	bone
34	chr15:56158200-56176400	Weak transcription	Left Ventricle	heart
35	chr15:56160200-56161400	Strong transcription	NHEK	skin
36	chr15:56160400-56161200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr15:56160400-56161200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr15:56160400-56161200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr15:56160400-56161400	Strong transcription	Primary T cells from cord blood	blood
40	chr15:56160400-56161600	Enhancers	Skeletal Muscle Female	skeletal muscle
41	chr15:56160600-56161400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr15:56160600-56164800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr15:56160800-56161400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr15:56160800-56164800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr15:56161000-56161200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr15:56161000-56161200	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr15:56161000-56161200	Genic enhancers	HUVEC	blood vessel
48	chr15:56161000-56161400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr15:56161000-56161400	Strong transcription	Liver	Liver
50	chr15:56161000-56161400	Strong transcription	Duodenum Mucosa	Duodenum

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