Variant report

Variant	rs62043815
Chromosome Location	chr15:56196176-56196177
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11550869	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs12898553	0.91[ASN][1000 genomes]
rs17238461	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs17238482	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17238489	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17819282	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17819300	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2136386	0.83[EUR][1000 genomes]
rs2175104	0.83[EUR][1000 genomes]
rs55782406	0.87[AFR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55858643	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55999037	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62043760	0.87[AFR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62043761	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62043763	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62043764	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62043792	0.87[AFR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62043793	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62043796	0.87[AFR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62043801	0.88[AFR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62043802	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62043810	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62043816	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62043847	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62043854	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62043858	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62045161	0.83[EUR][1000 genomes]
rs62045162	0.83[EUR][1000 genomes]
rs62045163	0.83[EUR][1000 genomes]
rs62045164	0.83[EUR][1000 genomes]
rs62045205	0.83[EUR][1000 genomes]
rs62045207	0.83[EUR][1000 genomes]
rs62045208	0.83[EUR][1000 genomes]
rs62046605	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs62046606	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs62046641	0.83[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs62046642	0.83[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs62046643	0.83[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs62046644	0.83[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs62046645	0.83[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs62046648	0.87[AFR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62046649	0.87[AFR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62046650	0.80[AFR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv457157	chr15:55722213-56255774	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv569539	chr15:55722213-56255774	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv569542	chr15:56185262-56210929	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56176000-56216200	Weak transcription	Fetal Intestine Small	intestine
2	chr15:56188400-56207800	Weak transcription	Primary T cells from cord blood	blood
3	chr15:56188600-56218400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr15:56190000-56220000	Weak transcription	Pancreas	Pancrea
5	chr15:56190200-56199400	Weak transcription	HSMMtube	muscle
6	chr15:56190200-56201800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr15:56190200-56221200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr15:56190400-56196600	Weak transcription	HMEC	breast
9	chr15:56190400-56199200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr15:56190400-56199200	Weak transcription	NHDF-Ad	bronchial
11	chr15:56190400-56199600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr15:56190400-56219800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr15:56190800-56196600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr15:56190800-56196600	Weak transcription	NHEK	skin
15	chr15:56190800-56199400	Weak transcription	Hela-S3	cervix
16	chr15:56192400-56207800	Weak transcription	Liver	Liver
17	chr15:56192600-56199800	Weak transcription	Psoas Muscle	Psoas
18	chr15:56192600-56200800	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr15:56192600-56209000	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr15:56194400-56196600	Weak transcription	HSMM	muscle
21	chr15:56195600-56196400	Weak transcription	Osteobl	bone
22	chr15:56195600-56196800	Enhancers	A549	lung
23	chr15:56195600-56199000	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr15:56195800-56196200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr15:56195800-56199200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr15:56195800-56199200	Weak transcription	NH-A	brain
27	chr15:56195800-56199400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr15:56195800-56199400	Weak transcription	NHLF	lung

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