Variant report

Variant	rs62043801
Chromosome Location	chr15:56178678-56178679
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11550869	0.85[EUR][1000 genomes]
rs12898553	0.93[ASN][1000 genomes]
rs17238461	0.85[EUR][1000 genomes]
rs17238482	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17238489	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17819282	0.88[AFR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17819300	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55782406	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55858643	0.83[EUR][1000 genomes]
rs55999037	0.83[EUR][1000 genomes]
rs62043760	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62043761	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62043763	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62043764	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62043792	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62043793	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62043796	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62043802	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62043810	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62043815	0.88[AFR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62043816	0.88[AFR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62043847	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62043854	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62043858	0.83[EUR][1000 genomes]
rs62046605	0.85[EUR][1000 genomes]
rs62046606	0.85[EUR][1000 genomes]
rs62046641	0.84[EUR][1000 genomes]
rs62046642	0.84[EUR][1000 genomes]
rs62046643	0.84[EUR][1000 genomes]
rs62046644	0.84[EUR][1000 genomes]
rs62046645	0.84[EUR][1000 genomes]
rs62046648	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62046649	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62046650	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv457157	chr15:55722213-56255774	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv569539	chr15:55722213-56255774	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	esv2761966	chr15:56167250-56192861	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv3361699	chr15:56173709-56192307	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56161200-56179800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr15:56166000-56185400	Weak transcription	Hela-S3	cervix
3	chr15:56172000-56186200	Weak transcription	Osteobl	bone
4	chr15:56172800-56189600	Weak transcription	Placenta	Placenta
5	chr15:56174600-56181000	Weak transcription	Primary hematopoietic stem cells	blood
6	chr15:56175000-56179800	Weak transcription	Liver	Liver
7	chr15:56175000-56181000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr15:56175200-56186000	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr15:56175400-56186200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr15:56175600-56186200	Weak transcription	NHEK	skin
11	chr15:56175800-56184800	Weak transcription	HSMM	muscle
12	chr15:56175800-56189400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr15:56176000-56181200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr15:56176000-56216200	Weak transcription	Fetal Intestine Small	intestine
15	chr15:56176600-56180200	Weak transcription	Psoas Muscle	Psoas
16	chr15:56176800-56186800	Weak transcription	NH-A	brain
17	chr15:56177400-56185000	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr15:56178000-56181000	Weak transcription	A549	lung

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