Variant report

Variant	rs62046684
Chromosome Location	chr16:81904447-81904448
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:81829706..81831905-chr16:81903990..81906262,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs13335168	0.83[AMR][1000 genomes]
rs28546769	0.83[AMR][1000 genomes]
rs28550771	0.83[AMR][1000 genomes]
rs28609062	1.00[AMR][1000 genomes]
rs28731296	0.83[AMR][1000 genomes]
rs55833904	0.83[AMR][1000 genomes]
rs56134131	0.83[AMR][1000 genomes]
rs61635216	0.83[AMR][1000 genomes]
rs72820812	0.88[EUR][1000 genomes]
rs72832046	1.00[AMR][1000 genomes]
rs72832051	0.83[AMR][1000 genomes]
rs72832057	1.00[AMR][1000 genomes]
rs72832061	1.00[AMR][1000 genomes]
rs72832066	1.00[AMR][1000 genomes]
rs72832068	1.00[AMR][1000 genomes]
rs72832071	1.00[AMR][1000 genomes]
rs72832080	1.00[AMR][1000 genomes]
rs9922196	0.83[AMR][1000 genomes]
rs9923151	0.83[AMR][1000 genomes]
rs9932427	0.83[AMR][1000 genomes]
rs9933031	0.83[AMR][1000 genomes]
rs9940462	0.83[AMR][1000 genomes]
rs9940492	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948448	chr16:81198147-81906766	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
2	nsv573365	chr16:81804972-81975892	Strong transcription Bivalent/Poised TSS Weak transcription ZNF genes & repeats Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv1065088	chr16:81878481-81953248	Enhancers ZNF genes & repeats Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81876200-81918200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr16:81880000-81911200	Weak transcription	Pancreas	Pancrea
3	chr16:81880400-81908200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr16:81894800-81912400	Weak transcription	Fetal Intestine Small	intestine
5	chr16:81896800-81910400	Weak transcription	Gastric	stomach
6	chr16:81898800-81907400	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr16:81898800-81912400	Weak transcription	Duodenum Mucosa	Duodenum
8	chr16:81899000-81934600	Weak transcription	Right Atrium	heart
9	chr16:81900400-81904800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
10	chr16:81900800-81925000	Weak transcription	Rectal Smooth Muscle	rectum
11	chr16:81901000-81907800	Weak transcription	Liver	Liver
12	chr16:81901000-81929200	Weak transcription	Brain Substantia Nigra	brain
13	chr16:81901200-81911200	Weak transcription	Lung	lung
14	chr16:81901200-81925000	Weak transcription	Adipose Nuclei	Adipose
15	chr16:81901400-81906400	Weak transcription	HUVEC	blood vessel
16	chr16:81901400-81906600	Weak transcription	Fetal Thymus	thymus
17	chr16:81901600-81906200	Strong transcription	Primary monocytes fromperipheralblood	blood
18	chr16:81901600-81906800	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr16:81901800-81906600	Strong transcription	Primary hematopoietic stem cells	blood
20	chr16:81902000-81905200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr16:81902000-81906200	Strong transcription	Primary neutrophils fromperipheralblood	blood
22	chr16:81902200-81905000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr16:81902600-81906200	Strong transcription	Primary B cells from peripheral blood	blood
24	chr16:81902600-81906200	Strong transcription	GM12878-XiMat	blood
25	chr16:81902600-81906400	Strong transcription	Primary B cells from cord blood	blood
26	chr16:81902600-81908000	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr16:81902800-81955600	Weak transcription	Fetal Kidney	kidney
28	chr16:81903000-81905200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr16:81903200-81907400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr16:81903200-81910000	Weak transcription	Spleen	Spleen
31	chr16:81904000-81905000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr16:81904400-81906200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr16:81904400-81916800	Weak transcription	Fetal Intestine Large	intestine

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