Variant report

Variant	rs72832051
Chromosome Location	chr16:81865784-81865785
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs13335168	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28546769	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28550771	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28609062	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28731296	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55833904	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56134131	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57963515	1.00[ASN][1000 genomes]
rs61635216	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62046684	0.83[AMR][1000 genomes]
rs6564925	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67174651	1.00[ASN][1000 genomes]
rs67283254	1.00[ASN][1000 genomes]
rs68118517	1.00[ASN][1000 genomes]
rs7194131	1.00[ASN][1000 genomes]
rs7204645	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72832045	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72832046	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72832048	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72832057	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72832061	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72832066	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72832068	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72832071	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72832080	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8044282	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8059316	1.00[ASN][1000 genomes]
rs8061071	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9922196	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9923151	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9932427	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9933031	1.00[EUR][1000 genomes]
rs9940462	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9940492	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948448	chr16:81198147-81906766	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
2	nsv573365	chr16:81804972-81975892	Strong transcription Bivalent/Poised TSS Weak transcription ZNF genes & repeats Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv1061544	chr16:81834313-81877375	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81850800-81868200	Weak transcription	Esophagus	oesophagus
2	chr16:81857200-81866400	Weak transcription	Right Atrium	heart
3	chr16:81857200-81867400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr16:81858800-81867400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr16:81858800-81878800	Weak transcription	Fetal Intestine Small	intestine
6	chr16:81861600-81871800	Enhancers	Primary hematopoietic stem cells	blood
7	chr16:81864400-81865800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr16:81864400-81866200	Flanking Active TSS	Primary B cells from cord blood	blood
9	chr16:81864400-81866400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
10	chr16:81864400-81866400	Enhancers	Colonic Mucosa	Colon
11	chr16:81864400-81866600	Enhancers	Spleen	Spleen
12	chr16:81864400-81866800	Enhancers	Primary T killer memory cells from peripheral blood	blood
13	chr16:81864400-81866800	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
14	chr16:81864400-81867000	Enhancers	Fetal Thymus	thymus
15	chr16:81864600-81865800	Active TSS	Rectal Mucosa Donor 29	rectum
16	chr16:81864600-81866800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
17	chr16:81864600-81866800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
18	chr16:81864600-81867600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
19	chr16:81864600-81869600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
20	chr16:81864800-81865800	Enhancers	H9 Cell Line	embryonic stem cell
21	chr16:81864800-81865800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr16:81864800-81865800	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
23	chr16:81864800-81866200	Enhancers	Primary T helper naive cells from peripheral blood	blood
24	chr16:81864800-81866200	Enhancers	Thymus	Thymus
25	chr16:81864800-81866800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr16:81865000-81865800	Enhancers	iPS-18 Cell Line	embryonic stem cell
27	chr16:81865000-81866000	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr16:81865000-81866000	Enhancers	Primary T cells from cord blood	blood
29	chr16:81865000-81866000	Bivalent Enhancer	Dnd41	blood
30	chr16:81865000-81866400	Enhancers	Primary T helper cells PMA-I stimulated	--
31	chr16:81865000-81866600	Enhancers	Primary T helper cells fromperipheralblood	blood
32	chr16:81865200-81865800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
33	chr16:81865200-81865800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr16:81865200-81865800	Enhancers	HUES48 Cell Line	embryonic stem cell
35	chr16:81865200-81865800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
36	chr16:81865200-81866000	Enhancers	iPS-15b Cell Line	embryonic stem cell
37	chr16:81865200-81866000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
38	chr16:81865200-81866000	Enhancers	NH-A	brain
39	chr16:81865200-81866400	Enhancers	HUES6 Cell Line	embryonic stem cell
40	chr16:81865200-81866400	Weak transcription	Lung	lung
41	chr16:81865200-81874200	Weak transcription	Pancreas	Pancrea
42	chr16:81865400-81866000	Enhancers	HUES64 Cell Line	embryonic stem cell
43	chr16:81865400-81866000	Flanking Active TSS	Primary B cells from peripheral blood	blood
44	chr16:81865400-81866200	Enhancers	H1 Cell Line	embryonic stem cell
45	chr16:81865400-81866200	Enhancers	Primary T cells fromperipheralblood	blood
46	chr16:81865400-81872800	Enhancers	Primary monocytes fromperipheralblood	blood
47	chr16:81865600-81865800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr16:81865600-81865800	Flanking Active TSS	Duodenum Mucosa	Duodenum
49	chr16:81865600-81866200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr16:81865600-81868200	Enhancers	Placenta	Placenta

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