Variant report

Variant	rs62049488
Chromosome Location	chr16:80176718-80176719
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10514482	0.83[EUR][1000 genomes]
rs16952369	0.84[EUR][1000 genomes]
rs16952436	0.83[EUR][1000 genomes]
rs4888070	0.84[EUR][1000 genomes]
rs4888072	0.81[EUR][1000 genomes]
rs62050789	1.00[AFR][1000 genomes]
rs62050790	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs62050791	1.00[AFR][1000 genomes]
rs62050792	1.00[AFR][1000 genomes]
rs62050795	1.00[AFR][1000 genomes]
rs62050804	0.80[EUR][1000 genomes]
rs62050805	0.92[EUR][1000 genomes]
rs62050806	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62050837	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62050841	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62050845	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833298	chr16:80122337-80314603	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1055982	chr16:80151604-80202923	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80176200-80177000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr16:80176200-80177200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr16:80176200-80178800	Enhancers	HepG2	liver
4	chr16:80176600-80177200	Bivalent Enhancer	NHDF-Ad	bronchial

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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