Variant report

Variant	rs62050841
Chromosome Location	chr16:80156192-80156193
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10514482	0.90[EUR][1000 genomes]
rs16952369	0.86[EUR][1000 genomes]
rs16952436	0.90[EUR][1000 genomes]
rs4888070	0.86[EUR][1000 genomes]
rs4888072	0.88[EUR][1000 genomes]
rs62049488	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62050789	1.00[AFR][1000 genomes]
rs62050790	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs62050791	1.00[AFR][1000 genomes]
rs62050792	1.00[AFR][1000 genomes]
rs62050795	1.00[AFR][1000 genomes]
rs62050804	0.83[EUR][1000 genomes]
rs62050805	0.95[EUR][1000 genomes]
rs62050806	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62050837	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62050845	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv906995	chr16:80094975-80166677	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv833298	chr16:80122337-80314603	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1055982	chr16:80151604-80202923	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80151800-80159600	Weak transcription	Adipose Nuclei	Adipose
2	chr16:80154400-80156800	Enhancers	Brain Germinal Matrix	brain
3	chr16:80154800-80156800	Enhancers	Fetal Stomach	stomach
4	chr16:80155000-80156800	Enhancers	Fetal Lung	lung
5	chr16:80155200-80156600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr16:80155200-80156600	Enhancers	NHDF-Ad	bronchial
7	chr16:80155200-80157400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr16:80155400-80156600	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr16:80155800-80156400	Enhancers	Stomach Smooth Muscle	stomach
10	chr16:80155800-80156600	Enhancers	Fetal Muscle Leg	muscle
11	chr16:80156000-80156200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr16:80156000-80156400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr16:80156000-80156400	Flanking Active TSS	Brain Hippocampus Middle	brain
14	chr16:80156000-80156400	Enhancers	Psoas Muscle	Psoas
15	chr16:80156000-80157200	Enhancers	Ovary	ovary
16	chr16:80156000-80157800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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