Variant report

Variant	rs62050792
Chromosome Location	chr16:80118982-80118983
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:80116624..80119575-chr16:80356454..80358256,2	MCF-7	breast:
2	chr16:80057651..80058466-chr16:80118533..80119366,4	MCF-7	breast:
3	chr16:80030381..80031931-chr16:80117976..80119153,11	MCF-7	breast:
4	chr16:80057651..80058518-chr16:80118488..80119366,5	MCF-7	breast:
5	chr16:80061252..80063823-chr16:80117741..80119543,2	MCF-7	breast:
6	chr16:80118484..80119338-chr16:80499839..80500773,2	MCF-7	breast:
7	chr16:79666242..79666830-chr16:80118596..80119353,2	MCF-7	breast:
8	chr16:79801497..79802215-chr16:80118580..80119199,3	MCF-7	breast:
9	chr16:79780426..79781260-chr16:80118290..80119045,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs62049488	1.00[AFR][1000 genomes]
rs62050789	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62050790	1.00[AFR][1000 genomes]
rs62050791	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62050795	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62050803	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62050804	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62050806	1.00[AFR][1000 genomes]
rs62050837	1.00[AFR][1000 genomes]
rs62050841	1.00[AFR][1000 genomes]
rs62050845	1.00[AFR][1000 genomes]
rs8046908	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv573294	chr16:80005642-80131944	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv906995	chr16:80094975-80166677	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80117800-80119000	Enhancers	Fetal Lung	lung
2	chr16:80118000-80119000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr16:80118400-80119000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr16:80118400-80119800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr16:80118400-80119800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr16:80118600-80119000	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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