Variant report

Variant	rs62053563
Chromosome Location	chr16:74652891-74652892
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:74649316..74653490-chr16:74654574..74658436,6	MCF-7	breast:
2	chr16:74650514..74653856-chr16:74682204..74686056,4	K562	blood:
3	chr16:74639257..74644662-chr16:74649340..74660012,16	MCF-7	breast:
4	chr16:74640174..74643079-chr16:74652030..74653630,2	K562	blood:

Variant related genes	Relation type
ENSG00000168411	Chromatin interaction
ENSG00000090863	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10400930	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1138860	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28377859	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4286131	0.83[EUR][1000 genomes]
rs4287593	0.82[EUR][1000 genomes]
rs4302071	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4344772	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4564599	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4888257	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4888259	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4888260	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6564146	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6564148	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6564152	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6564153	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6564154	0.82[EUR][1000 genomes]
rs7185722	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7190631	0.80[EUR][1000 genomes]
rs7195135	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7196627	0.84[AMR][1000 genomes]
rs7204804	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8047523	0.83[ASN][1000 genomes]
rs8048133	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs8048596	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs8053084	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs8054836	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8055784	0.82[EUR][1000 genomes]
rs8056788	0.84[AMR][1000 genomes]
rs8058034	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9927073	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9938833	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916687	chr16:74241238-74896721	Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	102 gene(s)	inside rSNPs	diseases
2	nsv949374	chr16:74466960-75172358	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
3	nsv1060629	chr16:74483574-74660669	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv1062517	chr16:74483574-74710623	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	nsv833279	chr16:74490746-74663073	Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
6	nsv1061095	chr16:74519718-75407020	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	123 gene(s)	inside rSNPs	diseases
7	nsv906905	chr16:74527618-74679244	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
8	esv275138	chr16:74647795-74722907	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
9	esv2760414	chr16:74647795-74741615	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs62053563	MLKL	Cis_1M	lymphoblastoid	RTeQTL
rs62053563	RFWD3	Cis_1M	lymphoblastoid	RTeQTL
rs62053563	RFWD3	cis	Esophagus Mucosa	GTEx

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:74641200-74653800	Weak transcription	Spleen	Spleen
2	chr16:74641400-74655800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr16:74641400-74656000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr16:74641600-74656000	Weak transcription	Aorta	Aorta
5	chr16:74641600-74657000	Weak transcription	Gastric	stomach
6	chr16:74641600-74657800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr16:74641800-74653600	Weak transcription	GM12878-XiMat	blood
8	chr16:74641800-74654600	Weak transcription	Primary B cells from peripheral blood	blood
9	chr16:74641800-74655200	Weak transcription	Primary B cells from cord blood	blood
10	chr16:74641800-74655400	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr16:74641800-74655400	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr16:74641800-74655800	Weak transcription	NHEK	skin
13	chr16:74641800-74656200	Weak transcription	HUVEC	blood vessel
14	chr16:74641800-74656600	Weak transcription	Brain Cingulate Gyrus	brain
15	chr16:74642000-74653200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr16:74642000-74654400	Weak transcription	Duodenum Mucosa	Duodenum
17	chr16:74642000-74655200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr16:74642000-74655200	Weak transcription	Fetal Brain Female	brain
19	chr16:74642000-74655800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr16:74642000-74656000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr16:74642000-74656000	Weak transcription	Left Ventricle	heart
22	chr16:74642000-74656800	Weak transcription	Liver	Liver
23	chr16:74642000-74657600	Weak transcription	Brain Hippocampus Middle	brain
24	chr16:74642000-74658200	Weak transcription	Right Ventricle	heart
25	chr16:74642200-74653200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr16:74642200-74653600	Weak transcription	NH-A	brain
27	chr16:74642200-74654200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr16:74642200-74654400	Weak transcription	HMEC	breast
29	chr16:74642200-74654600	Weak transcription	Fetal Muscle Trunk	muscle
30	chr16:74642200-74655200	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr16:74642200-74655200	Weak transcription	HSMM	muscle
32	chr16:74642200-74655200	Weak transcription	NHDF-Ad	bronchial
33	chr16:74642200-74655800	Weak transcription	Stomach Smooth Muscle	stomach
34	chr16:74642200-74656000	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr16:74642200-74656000	Weak transcription	Fetal Kidney	kidney
36	chr16:74642200-74656000	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr16:74642200-74656400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr16:74642200-74656400	Weak transcription	Rectal Smooth Muscle	rectum
39	chr16:74642200-74657400	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr16:74642200-74688800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr16:74642400-74653200	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr16:74642400-74653400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
43	chr16:74642400-74653400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr16:74642400-74653400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr16:74642400-74653600	Weak transcription	Adipose Nuclei	Adipose
46	chr16:74642400-74654200	Weak transcription	Fetal Intestine Small	intestine
47	chr16:74642400-74654400	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr16:74642400-74655200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr16:74642400-74655200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
50	chr16:74642400-74655200	Weak transcription	Muscle Satellite Cultured Cells	--

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