Variant report

Variant	rs620818
Chromosome Location	chr11:64018341-64018342
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr11:64017936-64020129	SK-N-SH	brain:	n/a	chr11:64018898-64018914 chr11:64018900-64018913 chr11:64019771-64019789 chr11:64019772-64019788 chr11:64019892-64019901 chr11:64018897-64018915 chr11:64018900-64018909 chr11:64019777-64019786 chr11:64018208-64018216
2	TAF1	chr11:64018135-64018481	H1-hESC	embryonic stem cell:	n/a	n/a
3	MAX	chr11:64018296-64019198	K562	blood:	n/a	chr11:64018921-64018931 chr11:64018511-64018521 chr11:64018925-64018935
4	ZBTB7A	chr11:64017941-64020437	ECC-1	luminal epithelium:	n/a	chr11:64018087-64018095 chr11:64020161-64020169 chr11:64018725-64018734 chr11:64018067-64018081
5	CTCF	chr11:64018177-64020203	A549	lung:	n/a	chr11:64018898-64018914 chr11:64018900-64018913 chr11:64019771-64019789 chr11:64019772-64019788 chr11:64019892-64019901 chr11:64018897-64018915 chr11:64018900-64018909 chr11:64020165-64020178 chr11:64019777-64019786 chr11:64018208-64018216
6	POLR2A	chr11:64018107-64018890	U87	brain:	n/a	n/a
7	MAX	chr11:64018017-64019071	H1-hESC	embryonic stem cell:	n/a	chr11:64018921-64018931 chr11:64018511-64018521 chr11:64018925-64018935
8	HCFC1	chr11:64018018-64021492	Hela-S3	cervix:	n/a	n/a
9	ZNF263	chr11:64017727-64018861	HEK293-T-REx	kidney:	n/a	chr11:64018555-64018576 chr11:64017964-64017973
10	RCOR1	chr11:64018284-64019036	K562	blood:	n/a	n/a
11	CBX3	chr11:64018276-64019013	K562	blood:	n/a	n/a
12	POLR2A	chr11:64018107-64018937	U87	brain:	n/a	n/a
13	POLR2A	chr11:64018277-64018976	H1-neurons	neurons:	n/a	n/a
14	ZBTB7A	chr11:64017755-64019290	K562	blood:	n/a	chr11:64018087-64018095 chr11:64018725-64018734 chr11:64018067-64018081
15	POLR2A	chr11:64018225-64020296	HUVEC	blood vessel:	n/a	n/a
16	POLR2A	chr11:64015740-64020690	H1-hESC	embryonic stem cell:	n/a	n/a
17	CCNT2	chr11:64018076-64019408	K562	blood:	n/a	chr11:64019293-64019302 chr11:64018927-64018936 chr11:64018461-64018470
18	POLR2A	chr11:64017618-64019008	SK-N-MC	brain:	n/a	n/a
19	MAZ	chr11:64018334-64019214	Hela-S3	cervix:	n/a	chr11:64018921-64018931 chr11:64018511-64018521 chr11:64018925-64018935
20	NANOG	chr11:64018331-64018565	H1-hESC	embryonic stem cell:	n/a	n/a
21	MAX	chr11:64018135-64019409	K562	blood:	n/a	chr11:64018921-64018931 chr11:64018511-64018521 chr11:64018925-64018935
22	MTA3	chr11:64018189-64018766	GM12878	blood:	n/a	n/a
23	UBTF	chr11:64018270-64019361	K562	blood:	n/a	n/a
24	POLR2A	chr11:64018184-64019426	K562	blood:	n/a	n/a
25	MAZ	chr11:64018276-64019187	K562	blood:	n/a	chr11:64018921-64018931 chr11:64018511-64018521 chr11:64018925-64018935
26	POLR2A	chr11:64018133-64019273	H1-hESC	embryonic stem cell:	n/a	n/a
27	EGR1	chr11:64018305-64018707	K562	blood:	n/a	chr11:64018437-64018447 chr11:64018456-64018469
28	REST	chr11:64018084-64019107	H1-neurons	neurons:	n/a	chr11:64018918-64018931
29	HMGN3	chr11:64018134-64019329	K562	blood:	n/a	n/a
30	MAZ	chr11:64017434-64020844	IMR90	lung:	n/a	chr11:64018921-64018931 chr11:64018511-64018521 chr11:64018925-64018935
31	MAX	chr11:64018337-64019322	A549	lung:	n/a	chr11:64018921-64018931 chr11:64018511-64018521 chr11:64018925-64018935
32	ZBTB7A	chr11:64017820-64019451	K562	blood:	n/a	chr11:64018087-64018095 chr11:64018725-64018734 chr11:64018067-64018081
33	MYC	chr11:64018142-64018358	H1-hESC	embryonic stem cell:	n/a	n/a
34	CTCF	chr11:64018170-64019101	H1-hESC	embryonic stem cell:	n/a	chr11:64018898-64018914 chr11:64018900-64018913 chr11:64018897-64018915 chr11:64018900-64018909 chr11:64018208-64018216
35	ZBTB7A	chr11:64018169-64020504	ECC-1	luminal epithelium:	n/a	chr11:64020161-64020169 chr11:64018725-64018734
36	TBP	chr11:64018256-64019269	H1-hESC	embryonic stem cell:	n/a	n/a
37	SIN3A	chr11:64018156-64020088	H1-hESC	embryonic stem cell:	n/a	chr11:64019890-64019904 chr11:64019737-64019750
38	CHD2	chr11:64018305-64019202	Hela-S3	cervix:	n/a	n/a
39	GTF2F1	chr11:64018288-64018345	H1-hESC	embryonic stem cell:	n/a	n/a
40	CTCF	chr11:64018260-64018410	GM12871	blood:	n/a	n/a
41	YY1	chr11:64018325-64018521	K562	blood:	n/a	chr11:64018461-64018472
42	CTCF	chr11:64018280-64018430	HCT-116	colon:	n/a	n/a
43	CTCF	chr11:64018240-64018390	GM12867	blood:	n/a	n/a
44	POLR2A	chr11:64018282-64020731	K562	blood:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:64018309-64018359	H1-hESC	embryonic stem cell:	embryo
2	chr11:64018309-64018359	T-47D	breast:	n/a
3	chr11:64018309-64018359	CMK	blood:	n/a
4	chr11:64018309-64018359	ECC-1	luminal epithelium:	n/a
5	chr11:64018309-64018359	AoSMC	blood vessel:	n/a
6	chr11:64018309-64018359	GM12891	blood:	n/a
7	chr11:64018309-64018359	LNCaP	prostate:	n/a
8	chr11:64018309-64018359	HCF	heart:	n/a
9	chr11:64018309-64018359	PFSK-1	brain:	n/a
10	chr11:64018309-64018359	HRCEpiC	kidney:	n/a
11	chr11:64018309-64018359	Caco-2	colon:	n/a
12	chr11:64018309-64018359	PANC-1	pancreas:	n/a
13	chr11:64018309-64018359	BJ	skin:	n/a
14	chr11:64018309-64018359	HUVEC	blood vessel:	n/a
15	chr11:64018309-64018359	AG09319	gingival:	n/a
16	chr11:64018309-64018359	Hepatocyte	liver:	n/a
17	chr11:64018309-64018359	HEK293	kidney:	embryo
18	chr11:64018309-64018359	SAEC	small airway:	n/a
19	chr11:64018309-64018359	GM12892	blood:	n/a
20	chr11:64018309-64018359	GM19239	blood:	n/a
21	chr11:64018309-64018359	SKMC	muscle:	n/a
22	chr11:64018309-64018359	PrEC	prostate:	n/a
23	chr11:64018309-64018359	IMR90	lung:	fetal
24	chr11:64018309-64018359	NHBE	bronchial:	n/a
25	chr11:64018309-64018359	HRPEpiC	eye:	n/a
26	chr11:64018309-64018359	HCM	heart:	n/a
27	chr11:64018309-64018359	HL-60	blood:	n/a
28	chr11:64018309-64018359	NH-A	brain:	n/a
29	chr11:64018309-64018359	ProgFib	skin:	n/a
30	chr11:64018309-64018359	Jurkat	blood:	n/a
31	chr11:64018309-64018359	GM12878	blood:	n/a
32	chr11:64018309-64018359	HCPEpiC	choroid plexus:	n/a
33	chr11:64018309-64018359	A549	lung:	n/a
34	chr11:64018309-64018359	HPAEpiC	pulmonary alveolar:	n/a
35	chr11:64018309-64018359	HAEpiC	amniotic membrane:	n/a
36	chr11:64018309-64018359	HRE	kidney:	n/a
37	chr11:64018309-64018359	HIPEpiC	eye:	n/a
38	chr11:64018309-64018359	HMEC	breast:	n/a
39	chr11:64018309-64018359	GM06990	blood:	n/a
40	chr11:64018309-64018359	AG04449	skin:	fetal
41	chr11:64018309-64018359	HepG2	liver:	n/a
42	chr11:64018309-64018359	BE2_C	brain:	n/a
43	chr11:64018309-64018359	SK-N-SH_RA	brain:	n/a
44	chr11:64018309-64018359	RPTEC	kidney:	n/a
45	chr11:64018309-64018359	HCT-116	colon:	n/a
46	chr11:64018309-64018359	AG04450	lung:	fetal
47	chr11:64018309-64018359	HNPCEpiC	eye:	n/a
48	chr11:64018309-64018359	MCF10A-Er-Src	breast:	n/a
49	chr11:64018309-64018359	ovcar-3	ovarian:	n/a
50	chr11:64018309-64018359	NHDF-neo	bronchial:	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:64015797..64019000-chr11:64055834..64058652,3	MCF-7	breast:
2	chr11:64017685..64020898-chr11:64124130..64127721,3	MCF-7	breast:
3	chr11:64017311..64024506-chr11:64050135..64055747,10	MCF-7	breast:
4	chr11:64016812..64021458-chr11:64049548..64056058,8	MCF-7	breast:
5	chr11:64016230..64019029-chr11:64083442..64086463,3	MCF-7	breast:
6	chr11:63951620..63954482-chr11:64017344..64021444,4	MCF-7	breast:
7	chr11:64017295..64020181-chr11:64543928..64546600,2	MCF-7	breast:
8	chr11:64003628..64022712-chr11:64064086..64078429,56	MCF-7	breast:
9	chr11:63930758..63935103-chr11:64018023..64022943,7	MCF-7	breast:
10	chr11:64017360..64020043-chr11:64060077..64062122,2	MCF-7	breast:
11	chr11:62367818..62370152-chr11:64017422..64019610,2	MCF-7	breast:
12	chr11:64008735..64009640-chr11:64018061..64018903,2	MCF-7	breast:
13	chr11:63971752..63972612-chr11:64018302..64018977,2	MCF-7	breast:
14	chr11:64012813..64019826-chr11:64070484..64074683,9	MCF-7	breast:

Variant related genes	Relation type
PLCB3	TF binding region
PPP1R14B	TF binding region
ENSG00000257086	TF binding region
PLCB3	CpG island
ENSG00000257086	CpG island
PPP1R14B	CpG island
ENSG00000182450	Chromatin interaction
ENSG00000173153	Chromatin interaction
ENSG00000269038	Chromatin interaction
ENSG00000133315	Chromatin interaction
ENSG00000002330	Chromatin interaction
ENSG00000173113	Chromatin interaction
ENSG00000126432	Chromatin interaction
ENSG00000168066	Chromatin interaction
ENSG00000173486	Chromatin interaction
ENSG00000168439	Chromatin interaction
ENSG00000173264	Chromatin interaction
ENSG00000162302	Chromatin interaction
ENSG00000219435	Chromatin interaction
ENSG00000149480	Chromatin interaction

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs2429457	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2508208	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2510067	0.85[AMR][1000 genomes]
rs2515239	0.93[AFR][1000 genomes]
rs2515240	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2622413	0.85[AFR][1000 genomes]
rs2622421	0.84[AFR][1000 genomes]
rs2622423	0.81[AFR][1000 genomes]
rs2701525	0.93[AFR][1000 genomes]
rs2701526	0.93[AFR][1000 genomes]
rs2701528	0.93[AFR][1000 genomes]
rs2845587	0.93[AFR][1000 genomes]
rs2845589	0.84[AFR][1000 genomes]
rs2845598	0.93[AFR][1000 genomes]
rs35525149	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4294564	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4587731	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4980526	0.93[AFR][1000 genomes]
rs605187	1.00[AMR][1000 genomes]
rs60647009	0.93[AFR][1000 genomes]
rs611637	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs633557	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs633561	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs668503	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:39 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897631	chr11:63664882-64129722	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	254 gene(s)	inside rSNPs	diseases
2	esv1802079	chr11:63746066-64151373	Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	247 gene(s)	inside rSNPs	diseases
3	nsv897646	chr11:63754986-64150370	Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	245 gene(s)	inside rSNPs	diseases
4	nsv1035875	chr11:63800238-64132030	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	234 gene(s)	inside rSNPs	diseases
5	nsv469961	chr11:63822940-64085967	Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	224 gene(s)	inside rSNPs	diseases
6	nsv897660	chr11:63860826-64125142	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	231 gene(s)	inside rSNPs	diseases
7	nsv897661	chr11:63863405-64129722	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	233 gene(s)	inside rSNPs	diseases
8	nsv897662	chr11:63889749-64150370	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	237 gene(s)	inside rSNPs	diseases
9	nsv897664	chr11:63919742-64150370	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	237 gene(s)	inside rSNPs	diseases
10	nsv468592	chr11:63924446-64042997	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	166 gene(s)	inside rSNPs	diseases
11	nsv555184	chr11:63924446-64042997	Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	166 gene(s)	inside rSNPs	diseases
12	nsv897665	chr11:63927695-64026144	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	155 gene(s)	inside rSNPs	diseases
13	nsv897666	chr11:63929493-64026144	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	155 gene(s)	inside rSNPs	diseases
14	nsv869944	chr11:63932152-64123062	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	227 gene(s)	inside rSNPs	diseases
15	nsv468593	chr11:63941734-64089874	Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	212 gene(s)	inside rSNPs	diseases
16	nsv555185	chr11:63941734-64089874	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	212 gene(s)	inside rSNPs	diseases
17	nsv555186	chr11:63949095-64097233	Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	212 gene(s)	inside rSNPs	diseases
18	nsv468595	chr11:63953121-64027888	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	146 gene(s)	inside rSNPs	diseases
19	nsv555187	chr11:63953121-64027888	Strong transcription Weak transcription Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	146 gene(s)	inside rSNPs	diseases
20	nsv897667	chr11:63964657-64078380	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	141 gene(s)	inside rSNPs	diseases
21	nsv897668	chr11:63964657-64085298	Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	163 gene(s)	inside rSNPs	diseases
22	nsv897669	chr11:63964657-64089874	Genic enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	164 gene(s)	inside rSNPs	diseases
23	nsv897670	chr11:63964657-64097233	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	164 gene(s)	inside rSNPs	diseases
24	nsv897671	chr11:63964657-64150370	Active TSS Flanking Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	179 gene(s)	inside rSNPs	diseases
25	nsv832186	chr11:63972260-64170059	Active TSS Genic enhancers Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	180 gene(s)	inside rSNPs	diseases
26	nsv897672	chr11:63979643-64082807	Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	140 gene(s)	inside rSNPs	diseases
27	esv1802320	chr11:63987425-64154633	Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
28	nsv897673	chr11:63991581-64018687	Flanking Active TSS Bivalent/Poised TSS Genic enhancers Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	92 gene(s)	inside rSNPs	diseases
29	nsv897675	chr11:63994692-64018687	Strong transcription Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	82 gene(s)	inside rSNPs	diseases
30	nsv897676	chr11:63994692-64022459	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	85 gene(s)	inside rSNPs	diseases
31	nsv897677	chr11:63994692-64023971	Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	85 gene(s)	inside rSNPs	diseases
32	nsv897678	chr11:63994692-64026144	Enhancers Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	85 gene(s)	inside rSNPs	diseases
33	nsv897679	chr11:63994692-64150370	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
34	nsv897680	chr11:63997338-64022459	Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	82 gene(s)	inside rSNPs	diseases
35	nsv897681	chr11:63998240-64022459	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	82 gene(s)	inside rSNPs	diseases
36	nsv541063	chr11:63998625-64020906	Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	78 gene(s)	inside rSNPs	diseases
37	nsv541064	chr11:63998625-64036450	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	84 gene(s)	inside rSNPs	diseases
38	nsv897682	chr11:63999529-64170500	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	164 gene(s)	inside rSNPs	diseases
39	nsv1043277	chr11:64002997-64132030	Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	157 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64015200-64018400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
2	chr11:64015200-64018400	Weak transcription	Small Intestine	intestine
3	chr11:64015200-64018400	Flanking Active TSS	HepG2	liver
4	chr11:64015400-64018400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr11:64015400-64018400	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr11:64015400-64018400	Enhancers	Fetal Muscle Leg	muscle
7	chr11:64015400-64018600	Weak transcription	Gastric	stomach
8	chr11:64015600-64018400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr11:64015600-64018400	Weak transcription	NHDF-Ad	bronchial
10	chr11:64015600-64018600	Enhancers	Liver	Liver
11	chr11:64015800-64018400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr11:64015800-64018600	Weak transcription	Fetal Kidney	kidney
13	chr11:64016200-64018400	Enhancers	Placenta	Placenta
14	chr11:64017200-64018400	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
15	chr11:64017200-64018400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
16	chr11:64017200-64018400	Enhancers	HUVEC	blood vessel
17	chr11:64017200-64018600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
18	chr11:64017400-64018400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
19	chr11:64017400-64018400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr11:64017400-64018600	Enhancers	Pancreas	Pancrea
21	chr11:64017600-64018400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr11:64017600-64018400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
23	chr11:64017800-64018400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr11:64017800-64018800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr11:64017800-64018800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr11:64017800-64020800	Active TSS	H9 Cell Line	embryonic stem cell
27	chr11:64018000-64018400	Enhancers	Primary B cells from cord blood	blood
28	chr11:64018000-64018400	Enhancers	Primary B cells from peripheral blood	blood
29	chr11:64018000-64018400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
30	chr11:64018000-64018400	Enhancers	Brain Hippocampus Middle	brain
31	chr11:64018000-64018400	Enhancers	Colon Smooth Muscle	Colon
32	chr11:64018000-64018400	Bivalent Enhancer	Fetal Brain Male	brain
33	chr11:64018000-64018400	Enhancers	Ovary	ovary
34	chr11:64018000-64018400	Enhancers	Placenta Amnion	Placenta Amnion
35	chr11:64018000-64018400	Enhancers	GM12878-XiMat	blood
36	chr11:64018000-64018400	Flanking Active TSS	Hela-S3	cervix
37	chr11:64018000-64018400	Flanking Active TSS	K562	blood
38	chr11:64018000-64018600	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr11:64018000-64018600	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
40	chr11:64018000-64018600	Flanking Active TSS	Duodenum Mucosa	Duodenum
41	chr11:64018000-64018600	Enhancers	Fetal Lung	lung
42	chr11:64018000-64018600	Enhancers	Stomach Mucosa	stomach
43	chr11:64018000-64018600	Enhancers	HSMMtube	muscle
44	chr11:64018000-64018800	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
45	chr11:64018000-64018800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
46	chr11:64018000-64018800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
47	chr11:64018000-64018800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr11:64018000-64018800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr11:64018000-64018800	Enhancers	Fetal Heart	heart
50	chr11:64018000-64018800	Flanking Active TSS	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links