Variant report

Variant	rs633557
Chromosome Location	chr11:63997338-63997339
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:53)
CpG islands
(count:61)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:53 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	HCFC1	chr11:63996936-63998871	Hela-S3	cervix:	n/a	n/a
2	ELF1	chr11:63997167-63998539	GM12878	blood:	n/a	chr11:63997996-63998008
3	REST	chr11:63997146-63998905	H1-neurons	neurons:	n/a	chr11:63997990-63998008 chr11:63997768-63997777
4	POLR2A	chr11:63996671-63998678	GM19193	blood:	n/a	n/a
5	POLR2A	chr11:63996500-63998737	SK-N-MC	brain:	n/a	n/a
6	POLR2A	chr11:63997132-63998781	GM12878	blood:	n/a	n/a
7	MAZ	chr11:63997288-63998781	IMR90	lung:	n/a	chr11:63997941-63997951
8	POLR2A	chr11:63997327-63998698	PFSK-1	brain:	n/a	n/a
9	POLR2A	chr11:63996332-63998544	K562	blood:	n/a	n/a
10	POLR2A	chr11:63997187-63998690	K562	blood:	n/a	n/a
11	POLR2A	chr11:63997135-63998556	MCF10A-Er-Src	breast:	n/a	n/a
12	MXI1	chr11:63997124-63998848	SK-N-SH	brain:	n/a	n/a
13	POLR2A	chr11:63997257-63998780	U87	brain:	n/a	n/a
14	POLR2A	chr11:63996584-63998771	HCT-116	colon:	n/a	n/a
15	HMGN3	chr11:63997095-63997387	K562	blood:	n/a	n/a
16	POLR2A	chr11:63996699-63998420	K562	blood:	n/a	n/a
17	POLR2A	chr11:63996942-63997421	HUVEC	blood vessel:	n/a	n/a
18	POLR2A	chr11:63996455-63998661	K562	blood:	n/a	n/a
19	POLR2A	chr11:63997319-63998810	HCT-116	colon:	n/a	n/a
20	SMARCB1	chr11:63997120-63998759	Hela-S3	cervix:	n/a	n/a
21	POLR2A	chr11:63997291-63997408	Hela-S3	cervix:	n/a	n/a
22	POLR2A	chr11:63996897-63998454	PBDE	blood:	n/a	n/a
23	POLR2A	chr11:63996753-63998666	GM18505	blood:	n/a	n/a
24	POLR2A	chr11:63996417-63998553	U87	brain:	n/a	n/a
25	MTA3	chr11:63996739-63998810	GM12878	blood:	n/a	n/a
26	PML	chr11:63997307-63998849	GM12878	blood:	n/a	n/a
27	POLR2A	chr11:63996646-63998449	GM12878	blood:	n/a	n/a
28	RFX5	chr11:63997316-63997355	HepG2	liver:	n/a	n/a
29	POLR2A	chr11:63996526-63998738	GM12878	blood:	n/a	n/a
30	POLR2A	chr11:63996722-63999036	HepG2	liver:	n/a	n/a
31	POLR2A	chr11:63996457-63998559	U87	brain:	n/a	n/a
32	NR2F2	chr11:63997140-63998787	K562	blood:	n/a	n/a
33	STAT5A	chr11:63997141-63998446	GM12878	blood:	n/a	chr11:63998106-63998118
34	POLR2A	chr11:63996850-63998780	U87	brain:	n/a	n/a
35	POLR2A	chr11:63996688-63997420	GM12878	blood:	n/a	n/a
36	POLR2A	chr11:63996559-63998804	K562	blood:	n/a	n/a
37	POLR2A	chr11:63996582-63998778	ECC-1	luminal epithelium:	n/a	n/a
38	POLR2A	chr11:63997071-63998601	PANC-1	pancreas:	n/a	n/a
39	POLR2A	chr11:63996427-63998861	SK-N-SH	brain:	n/a	n/a
40	MTA3	chr11:63996972-63997406	GM12878	blood:	n/a	n/a
41	POLR2A	chr11:63997284-63998757	K562	blood:	n/a	n/a
42	POLR2A	chr11:63997139-63998786	K562	blood:	n/a	n/a
43	POLR2A	chr11:63996336-63998779	PANC-1	pancreas:	n/a	n/a
44	POLR2A	chr11:63996970-63998710	GM12892	blood:	n/a	n/a
45	POLR2A	chr11:63996577-63998789	Raji	blood:	n/a	n/a
46	POLR2A	chr11:63996582-63998772	Hela-S3	cervix:	n/a	n/a
47	POLR2A	chr11:63996670-63998794	GM12892	blood:	n/a	n/a
48	POLR2A	chr11:63996668-63998775	GM12891	blood:	n/a	n/a
49	SMARCC1	chr11:63997194-63998754	Hela-S3	cervix:	n/a	n/a
50	NFATC1	chr11:63997266-63998455	GM12878	blood:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:63997306-63997356	AG04449	skin:	fetal
2	chr11:63997306-63997356	HRE	kidney:	n/a
3	chr11:63997306-63997356	MCF10A-Er-Src	breast:	n/a
4	chr11:63997306-63997356	HCF	heart:	n/a
5	chr11:63997306-63997356	ovcar-3	ovarian:	n/a
6	chr11:63997306-63997356	AG10803	skin:	n/a
7	chr11:63997306-63997356	ProgFib	skin:	n/a
8	chr11:63997306-63997356	RPTEC	kidney:	n/a
9	chr11:63997306-63997356	AG09319	gingival:	n/a
10	chr11:63997306-63997356	Jurkat	blood:	n/a
11	chr11:63997306-63997356	SK-N-SH_RA	brain:	n/a
12	chr11:63997306-63997356	U87	brain:	n/a
13	chr11:63997306-63997356	GM06990	blood:	n/a
14	chr11:63997306-63997356	T-47D	breast:	n/a
15	chr11:63997306-63997356	Hela-S3	cervix:	n/a
16	chr11:63997306-63997356	HEEpiC	esophagus:	n/a
17	chr11:63997306-63997356	HMEC	breast:	n/a
18	chr11:63997306-63997356	AG04450	lung:	fetal
19	chr11:63997306-63997356	HNPCEpiC	eye:	n/a
20	chr11:63997306-63997356	GM12878	blood:	n/a
21	chr11:63997306-63997356	SAEC	small airway:	n/a
22	chr11:63997306-63997356	HCPEpiC	choroid plexus:	n/a
23	chr11:63997306-63997356	HUVEC	blood vessel:	n/a
24	chr11:63997306-63997356	SK-N-SH	brain:	n/a
25	chr11:63997306-63997356	GM12892	blood:	n/a
26	chr11:63997306-63997356	NHBE	bronchial:	n/a
27	chr11:63997306-63997356	NHDF-neo	bronchial:	n/a
28	chr11:63997306-63997356	Caco-2	colon:	n/a
29	chr11:63997306-63997356	HCM	heart:	n/a
30	chr11:63997306-63997356	AG09309	skin:	n/a
31	chr11:63997306-63997356	LNCaP	prostate:	n/a
32	chr11:63997306-63997356	ECC-1	luminal epithelium:	n/a
33	chr11:63997306-63997356	HL-60	blood:	n/a
34	chr11:63997306-63997356	BE2_C	brain:	n/a
35	chr11:63997306-63997356	HEK293	kidney:	embryo
36	chr11:63997306-63997356	GM19239	blood:	n/a
37	chr11:63997306-63997356	K562	blood:	n/a
38	chr11:63997306-63997356	IMR90	lung:	fetal
39	chr11:63997306-63997356	HRCEpiC	kidney:	n/a
40	chr11:63997306-63997356	HCT-116	colon:	n/a
41	chr11:63997306-63997356	NT2-D1	testis:	n/a
42	chr11:63997306-63997356	NB4	blood:	n/a
43	chr11:63997306-63997356	HepG2	liver:	n/a
44	chr11:63997306-63997356	PANC-1	pancreas:	n/a
45	chr11:63997306-63997356	SK-N-MC	brain:	n/a
46	chr11:63997306-63997356	A549	lung:	n/a
47	chr11:63997306-63997356	NH-A	brain:	n/a
48	chr11:63997306-63997356	AoSMC	blood vessel:	n/a
49	chr11:63997306-63997356	GM12891	blood:	n/a
50	chr11:63997306-63997356	PrEC	prostate:	n/a

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:63995120..63997968-chr11:64121307..64123121,2	K562	blood:
2	chr11:63994977..63999244-chr11:64052371..64054935,4	MCF-7	breast:
3	chr11:63951708..63954659-chr11:63996505..63999341,3	MCF-7	breast:
4	chr11:63931926..63934218-chr11:63996442..63998414,3	MCF-7	breast:
5	chr11:63997014..63999742-chr11:64070693..64073511,5	MCF-7	breast:
6	chr11:63931932..63936018-chr11:63996543..64001155,4	MCF-7	breast:
7	chr11:63994757..64000133-chr11:64050787..64054663,5	MCF-7	breast:
8	chr11:63997112..63999658-chr11:64063804..64066136,2	MCF-7	breast:

No data

Variant related genes	Relation type
DNAJC4	TF binding region
TRPT1	TF binding region
VEGFB	TF binding region
VEGFB	CpG island
TRPT1	CpG island
DNAJC4	CpG island
ENSG00000173153	Chromatin interaction
ENSG00000168439	Chromatin interaction
ENSG00000133315	Chromatin interaction
ENSG00000168071	Chromatin interaction
ENSG00000002330	Chromatin interaction
ENSG00000173264	Chromatin interaction
ENSG00000219435	Chromatin interaction
ENSG00000182450	Chromatin interaction

Extended variants
information (count: 67 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs2254709	0.80[YRI][hapmap]
rs2429457	0.92[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2508208	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2510067	0.85[AMR][1000 genomes]
rs2515239	0.95[AFR][1000 genomes]
rs2515240	0.93[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2622413	0.93[YRI][hapmap];0.87[AFR][1000 genomes]
rs2622415	0.93[YRI][hapmap];0.81[AFR][1000 genomes]
rs2622416	0.93[YRI][hapmap];0.81[AFR][1000 genomes]
rs2622421	0.93[YRI][hapmap];0.85[AFR][1000 genomes]
rs2622423	0.82[AFR][1000 genomes]
rs2701525	0.93[YRI][hapmap];0.95[AFR][1000 genomes]
rs2701526	0.95[AFR][1000 genomes]
rs2701528	0.93[YRI][hapmap];0.95[AFR][1000 genomes]
rs2701529	0.92[YRI][hapmap];0.81[AFR][1000 genomes]
rs2701538	0.80[YRI][hapmap]
rs2845587	0.95[AFR][1000 genomes]
rs2845589	0.93[YRI][hapmap];0.85[AFR][1000 genomes]
rs2845591	0.93[YRI][hapmap];0.81[AFR][1000 genomes]
rs2845598	0.95[AFR][1000 genomes]
rs35525149	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4294564	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4587731	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4980526	0.95[AFR][1000 genomes]
rs605187	1.00[AMR][1000 genomes]
rs60647009	0.95[AFR][1000 genomes]
rs611637	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs620818	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs633561	0.87[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs668503	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:37 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897631	chr11:63664882-64129722	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	254 gene(s)	inside rSNPs	diseases
2	esv1802079	chr11:63746066-64151373	Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	247 gene(s)	inside rSNPs	diseases
3	nsv897646	chr11:63754986-64150370	Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	245 gene(s)	inside rSNPs	diseases
4	nsv1035875	chr11:63800238-64132030	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	234 gene(s)	inside rSNPs	diseases
5	nsv469961	chr11:63822940-64085967	Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	224 gene(s)	inside rSNPs	diseases
6	nsv897660	chr11:63860826-64125142	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	231 gene(s)	inside rSNPs	diseases
7	nsv897661	chr11:63863405-64129722	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	233 gene(s)	inside rSNPs	diseases
8	nsv897662	chr11:63889749-64150370	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	237 gene(s)	inside rSNPs	diseases
9	nsv897664	chr11:63919742-64150370	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	237 gene(s)	inside rSNPs	diseases
10	nsv468592	chr11:63924446-64042997	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	166 gene(s)	inside rSNPs	diseases
11	nsv555184	chr11:63924446-64042997	Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	166 gene(s)	inside rSNPs	diseases
12	nsv897665	chr11:63927695-64026144	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	155 gene(s)	inside rSNPs	diseases
13	nsv897666	chr11:63929493-64026144	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	155 gene(s)	inside rSNPs	diseases
14	nsv869944	chr11:63932152-64123062	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	227 gene(s)	inside rSNPs	diseases
15	nsv468593	chr11:63941734-64089874	Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	212 gene(s)	inside rSNPs	diseases
16	nsv555185	chr11:63941734-64089874	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	212 gene(s)	inside rSNPs	diseases
17	nsv555186	chr11:63949095-64097233	Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	212 gene(s)	inside rSNPs	diseases
18	nsv468595	chr11:63953121-64027888	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	146 gene(s)	inside rSNPs	diseases
19	nsv555187	chr11:63953121-64027888	Strong transcription Weak transcription Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	146 gene(s)	inside rSNPs	diseases
20	nsv897667	chr11:63964657-64078380	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	141 gene(s)	inside rSNPs	diseases
21	nsv897668	chr11:63964657-64085298	Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	163 gene(s)	inside rSNPs	diseases
22	nsv897669	chr11:63964657-64089874	Genic enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	164 gene(s)	inside rSNPs	diseases
23	nsv897670	chr11:63964657-64097233	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	164 gene(s)	inside rSNPs	diseases
24	nsv897671	chr11:63964657-64150370	Active TSS Flanking Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	179 gene(s)	inside rSNPs	diseases
25	nsv541061	chr11:63970174-64010995	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	76 gene(s)	inside rSNPs	diseases
26	nsv832186	chr11:63972260-64170059	Active TSS Genic enhancers Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	180 gene(s)	inside rSNPs	diseases
27	nsv897672	chr11:63979643-64082807	Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	140 gene(s)	inside rSNPs	diseases
28	esv1802320	chr11:63987425-64154633	Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
29	nsv897673	chr11:63991581-64018687	Flanking Active TSS Bivalent/Poised TSS Genic enhancers Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	92 gene(s)	inside rSNPs	diseases
30	esv992196	chr11:63992534-64002355	Active TSS Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
31	nsv897674	chr11:63994692-64006292	Genic enhancers Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
32	nsv897675	chr11:63994692-64018687	Strong transcription Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	82 gene(s)	inside rSNPs	diseases
33	nsv897676	chr11:63994692-64022459	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	85 gene(s)	inside rSNPs	diseases
34	nsv897677	chr11:63994692-64023971	Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	85 gene(s)	inside rSNPs	diseases
35	nsv897678	chr11:63994692-64026144	Enhancers Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	85 gene(s)	inside rSNPs	diseases
36	nsv897679	chr11:63994692-64150370	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
37	nsv897680	chr11:63997338-64022459	Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	82 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs633557	NUDT22	cis	multi-tissue	Pritchard

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63994600-63997400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr11:63994600-63997600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:63994600-64001200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr11:63995200-63997400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr11:63995200-63997400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr11:63995200-63997600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr11:63996400-63997400	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr11:63996400-63997400	Enhancers	Primary B cells from peripheral blood	blood
9	chr11:63996400-63997400	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr11:63996400-63997400	Enhancers	Fetal Muscle Leg	muscle
11	chr11:63996600-63997400	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr11:63996600-63997400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr11:63996600-63997400	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr11:63996600-63997400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
15	chr11:63996600-63997400	Enhancers	Placenta	Placenta
16	chr11:63996600-63997400	Genic enhancers	Fetal Stomach	stomach
17	chr11:63996600-63997400	Enhancers	Stomach Mucosa	stomach
18	chr11:63996600-63997400	Enhancers	HMEC	breast
19	chr11:63996600-63997600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr11:63996600-63997600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr11:63996600-63997600	Enhancers	Aorta	Aorta
22	chr11:63996600-63997600	Enhancers	Fetal Heart	heart
23	chr11:63996600-63997600	Enhancers	Pancreas	Pancrea
24	chr11:63996600-63997600	Enhancers	Spleen	Spleen
25	chr11:63996600-63997800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr11:63996600-63997800	Flanking Active TSS	Dnd41	blood
27	chr11:63996600-63997800	Flanking Active TSS	Hela-S3	cervix
28	chr11:63996800-63997400	Enhancers	ES-I3 Cell Line	embryonic stem cell
29	chr11:63996800-63997400	Enhancers	H1 Cell Line	embryonic stem cell
30	chr11:63996800-63997400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr11:63996800-63997400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr11:63996800-63997400	Transcr. at gene 5' and 3'	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr11:63996800-63997400	Flanking Active TSS	Brain Germinal Matrix	brain
34	chr11:63996800-63997400	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
35	chr11:63996800-63997400	Enhancers	Duodenum Smooth Muscle	Duodenum
36	chr11:63996800-63997400	Enhancers	Esophagus	oesophagus
37	chr11:63996800-63997400	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
38	chr11:63996800-63997400	Enhancers	Left Ventricle	heart
39	chr11:63996800-63997600	Flanking Active TSS	Brain Hippocampus Middle	brain
40	chr11:63996800-63997600	Enhancers	Gastric	stomach
41	chr11:63996800-63997600	Enhancers	Lung	lung
42	chr11:63996800-63997600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
43	chr11:63996800-63997600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
44	chr11:63996800-63997800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
45	chr11:63996800-63997800	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
46	chr11:63996800-63998000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
47	chr11:63996800-63998000	Flanking Active TSS	Stomach Smooth Muscle	stomach
48	chr11:63996800-63998800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
49	chr11:63997000-63997400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr11:63997000-63997400	Enhancers	Cortex derived primary cultured neurospheres	brain

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